Copy aseg.auto.mgz to aseg.manedit.mgz, then edit aseg.manedit.mgz. If
you are using v7, then you can run
recon-all -s subject -autorecon2-samseg -autorecon3
On 8/13/2020 5:35 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution
FS editing experts, I have a subject with enlarged ventricles and
processed the subject with recon-all –bigventricles flag.
The surfaces look good but the subcortical segmentation and some WM
around the ventricles , especially for the right hem, are poor.
Images below. What is the best approach to edit this segmentation?
There are some WM edits required and some caudate, lentiform edits
as well. Is the aseg or aseg+aparc edited?
Jim
------------------------------------------------------------------------
The materials in this message are private and may contain Protected
Healthcare Information or other information of a sensitive nature. If
you are not the intended recipient, be advised that any unauthorized
use, disclosure, copying or the taking of any action in reliance on
the contents of this information is strictly prohibited. If you have
received this email in error, please immediately notify the sender via
telephone or return mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
