External Email - Use Caution        

Hi all,

In previous datasets, and prior to FS 7, we independently ran ANTs denosing on 
the input T1s prior to running recon-all,
However, FS 7.1 now appears to use the  denosing utility in parts of the 
pipeline.

"ANTS denoise is used when creating the orig surface (but not thefinal 
surfaces)"

Does this mean the denoised image is only used in the segmentation part of the 
pipeline (to generated the aseg.mgz) and does not propagate through to final 
surfaces?  Why not use  denoised T1 through the surface-generation phase of the 
pipeline.

Can you provide some further clarification.

Thx.
Jim




________________________________
The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Reply via email to