Re: [Freesurfer] Freesurfer 7.1.0 on CentOS 8.1 {Disarmed}

fsbuild Thu, 05 Nov 2020 20:49:13 -0800

        External Email - Use Caution        

Hello Ali,
I would try using the RPM installer which should at least check some 
dependencies on X packages, system libraries, etc.,&nbsp;
https://secure-web.cisco.com/1QZVOusYuqG6pzgftW11woMO3J7wlOTz6CpOKDAkTB2PSKdv7HWkk1N4ZgDbrS9Ofxy-S0PLYnkCeiBbxFw3i6PW1_XXZ7IhEjoNtTlBrC8pfgQZxQ47oT-EE0H_Xci9GjTO2QyMiKh1avC8LxBuz-tFj4GUzYylvvNzU4dQp9nuq9gWQk6yDnjfVnf4GC14a2I0nJwT1F697l_HjoNb2mA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.1.1%2Ffreesurfer-CentOS8-7.1.1-1.x86_64.rpm
- R.


On Nov 5, 2020, at 22:39, Snedden, Ali 
&lt;ali.sned...@nationwidechildrens.org&gt; 
wrote:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;External Email - Use 
Caution&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Hello,&nbsp;&nbsp;I’ve 
seen a couple mentions on the list-serv about difficulties using Freesurfer on 
CentOS 8.&nbsp; &nbsp;My issue is likely similar, but I have a few more 
details.&nbsp; I downloaded 
freesurfer-linux-centos8_x86_64-7.1.0.tar.gz.&nbsp;&nbsp; When I launch 
`freeview`, it pops up a white/empty X window for a moment and then quickly 
disappears.&nbsp;&nbsp;&nbsp;E.g.&nbsp;$ freeviewMESA-LOADER: failed to open 
swrast (search paths /usr/lib64/dri)libGL error: failed to load driver: 
swrastAborted (core dumped)&nbsp;I vaguely recall that the libGL errors 
_aren’t_ fatal.&nbsp; I’ve seen them with other X applications.&nbsp; Digging 
around the abort logs, I found the stack trace (see&nbsp;end&nbsp;of 
email).&nbsp;&nbsp;Do you have thoughts on this?&nbsp; I thought it might be a 
VTK compatibility issue, but that is a guess at best.&nbsp;Best 
regards,Ali&nbsp;&nbsp;###################### The stack trace 
########################&nbsp;[ccpp-2020-11-05-09:15:34-22241]# cat 
core_backtrace{ &nbsp; "signal": 6, &nbsp; "executable": 
"/gpfs0/export/apps/opt/freesurfer/7.1.0/bin/freeview", &nbsp; 
"only_crash_thread": true, &nbsp; "stacktrace":&nbsp; &nbsp; &nbsp; [ { &nbsp; 
"crash_thread": true&nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "frames":&nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; [ { &nbsp; "address": 140352624871839&nbsp; 
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&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "function_name": "raise"&nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "file_name": 
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"/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5"&nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; }&nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; , { &nbsp; "address": 140352637092336&nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "build_id": 
"e09fcae905f4b0eb9e9172fc60003dedd101a2f9"&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; , &nbsp; "build_id_offset": 2552304&nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "function_name": 
"QCoreApplication::exec()"&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; , &nbsp; "file_name": 
"/gpfs0/export/apps/opt/freesurfer/7.1.0/lib/qt/lib/libQt5Core.so.5"&nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; }&nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; , { &nbsp; "address": 4615883&nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "build_id": 
"0de18d9e888c309c18e5e9450078f0fa6f19efa3"&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; , &nbsp; "build_id_offset": 421579&nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; , &nbsp; "file_name": 
"/gpfs0/export/apps/opt/freesurfer/7.1.0/bin/freeview"&nbsp; &nbsp; &nbsp; 
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; } ]&nbsp; &nbsp; &nbsp; &nbsp; } 
]}&nbsp;_______________________________________________Freesurfer mailing 
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Re: [Freesurfer] Freesurfer 7.1.0 on CentOS 8.1 {Disarmed}

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