I'm sure they will. When you re-run it, add --debug as the first
argument and capture the entire terminal output to a file (don't try to
take a snapshot)
On 11/13/2020 11:50 AM, Walsh, Erin wrote:
External Email - Use Caution
Not presently, as I would need to install on my personal computer. I
can ask HPC IT to replace the file again and retest to see if things
replicate...
Erin
------------------------------------------------------------------------
*From:* Douglas N. Greve <[email protected]>
*Sent:* Friday, November 13, 2020 11:48 AM
*To:* Walsh, Erin <[email protected]>;
[email protected] <[email protected]>
*Subject:* Re: tkregister issue with reg-feat2anat
Can you run it outside of the HCP?
On 11/13/2020 11:27 AM, Walsh, Erin wrote:
External Email - Use Caution
From the HPC, I am running: freesurfer/7.1.0
Yes, the file is in the /bin:
[edub@longleaf-login1 dicom2nifti]$ ls $FREESURFER_HOME/bin/tkreg*
/nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregister2/nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregisterfv
/nas/longleaf/apps/freesurfer/7.1.0/freesurfer/bin/tkregister2_cmdl
------------------------------------------------------------------------
*From:* Douglas N. Greve <[email protected]>
<mailto:[email protected]>
*Sent:* Friday, November 13, 2020 11:21 AM
*To:* Walsh, Erin <[email protected]>
<mailto:[email protected]>; [email protected]
<mailto:[email protected]>
<[email protected]> <mailto:[email protected]>
*Subject:* Re: tkregister issue with reg-feat2anat
What version of FS are you running? Can you find tkregister2_cmdl in
$FREESURFER_HOME/bin ?
On 11/13/2020 10:51 AM, Walsh, Erin wrote:
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