External Email - Use Caution Hi, following up on this. The difference I see in the file sent vs previous file is the version line:
Old: set VERSION = 'reg-feat2anat 7.1.0'; New: set VERSION = 'reg-feat2anat @FS_VERSION@'; Could this be the issue? Hence the @FS_VERSION@ error in the debug output? Thanks again, Erin ________________________________ From: Walsh, Erin <[email protected]> Sent: Friday, November 13, 2020 1:45 PM To: Douglas N. Greve <[email protected]>; [email protected] <[email protected]> Subject: Re: tkregister issue with reg-feat2anat Thanks. I have attached the error output when using the debug option when attempting to run a subject. When I type from the command line (no --feat or --subject options), it is an identical error: [edub@longleaf-login1 Freesurfer]$ reg-feat2anat --debug : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. : Command not found. reg-feat2anat @FS_VERSION@ : Command not found. -- Erin Walsh, Ph.D. Assistant Professor University of North Carolina-Chapel Hill Department of Psychiatry Chapel Hill, NC 27599-3367 [email protected] pronouns: she/her ________________________________ From: Douglas N. Greve <[email protected]> Sent: Friday, November 13, 2020 12:01 PM To: Walsh, Erin <[email protected]>; [email protected] <[email protected]> Subject: Re: tkregister issue with reg-feat2anat I'm sure they will. When you re-run it, add --debug as the first argument and capture the entire terminal output to a file (don't try to take a snapshot) On 11/13/2020 11:50 AM, Walsh, Erin wrote: External Email - Use Caution Not presently, as I would need to install on my personal computer. I can ask HPC IT to replace the file again and retest to see if things replicate... Erin ________________________________ From: Douglas N. Greve <[email protected]><mailto:[email protected]> Sent: Friday, November 13, 2020 11:48 AM To: Walsh, Erin <[email protected]><mailto:[email protected]>; [email protected]<mailto:[email protected]> <[email protected]><mailto:[email protected]> Subject: Re: tkregister issue with reg-feat2anat Can you run it outside of the HCP? On 11/13/2020 11:27 AM, Walsh, Erin wrote:
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
