Hi Carolin
What did you name them? Also, we won’t really be able to diagnose things unless
you upload the entire tarred/gzipped subject directory
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Caroline Chwiesko
Sent: Friday, March 26, 2021 8:04 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] How to edit GM when WM is ok
External Email - Use Caution
Thank you for your response! I followed the instructions for FTP file exchange.
And did then:
ftp> cd transfer/incoming
ftp> put filename.txt
Are the images not there?
Cheers
Carolin
On Fri, Mar 26, 2021 at 3:20 PM Fischl, Bruce
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
Hi Carolin
Where did you upload the images?
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Caroline Chwiesko
Sent: Friday, March 26, 2021 6:08 PM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] How to edit GM when WM is ok
External Email - Use Caution
Hello Bruce,
I wrote a week ago to this mailing list to ask for advice about how to edit an
issue where an entire Gyrus will not be captured by the pial surface. I
uploaded some images to show what that looks like. I just wanted to send a
friendly reminder to make sure it won't be forgotten ;)
Thank you very much for any help!
Cheers
Carolin
On Fri, Mar 19, 2021 at 4:54 PM Caroline Chwiesko
<cchwi...@uci.edu<mailto:cchwi...@uci.edu>> wrote:
Hi Bruce,
thank you very much for taking a look at that. I uploaded 3 images in different
orientations. I can not see any white matter.
Cheers
Carolin
On Fri, Mar 19, 2021 at 7:26 AM Fischl, Bruce
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>> wrote:
Hi Carolin
Yes, I guess send along images using all 3 orientations. There has to be some
white matter there somewhere….
Cheers
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Caroline Chwiesko
Sent: Friday, March 19, 2021 12:28 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] How to edit GM when WM is ok
External Email - Use Caution
Hello Freesurfer experts,
i am doing some editing after recon-all. I have the issue that one gyrus is not
captured by the pial surface. There is no wm that is wrong and that i could
correct. It looks like this gyrus has a weird angle so there is actually no WM
visible. How can such an error be corrected? I am happy to send a couple images
if needed.
Thank you very much in advance for any help!
Cheers
Carolin
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