External Email - Use Caution Hi Wei, You can directly extract the volumes from all subjects within your Freesurfer Analysis folder by using the following command quantifyHAsubregions.sh hippoSf T1 result.txt Best regards, Abdalla Z Mohamed. From: Wei Shao External Email - Use Caution Hello,Dear Freesurfer exports I have a question about the pipeline of hippocampal sub-volume extraction: quantifyHAsubregions.sh hippoSf <T1>-<analysisID> <output_file> <OPTIONAL_SUBJECTS_DIR>Let's say I have two different groups of analysisID such as sub-AVP???? and sub-BAY???? I can pass a wildcard to extract the data of T2 scan from all sub-BAY???? subjects by quantifyHAsubregions.sh hippoSf BAY*-T2 result.txt But Is there any way that I can extract the sub-volume from all the two different group subjects at one time? Thanks. Best, Wei |
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