External Email - Use Caution Hi, Abdalla Z Mohamed
Thanks for your reply, but this is code is for T1 scan only according to the instruction, I want to extract the volume from the T2 (for segmentation based only on the additional scan ) Best, Wei On Mon, May 3, 2021 at 7:55 PM <bio.abdallah2...@gmail.com> wrote: > External Email - Use Caution > > Hi Wei, > > You can directly extract the volumes from all subjects within your > Freesurfer Analysis folder by using the following command > > quantifyHAsubregions.sh hippoSf T1 result.txt > > > > Best regards, > > Abdalla Z Mohamed. > > > > > > *From: *Wei Shao <ws...@research.baycrest.org> > *Sent: *Tuesday, 4 May 2021 5:22 AM > *To: *Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] Question about hippocampal sub-volume extraction > > > > * External Email - Use Caution * > > Hello,Dear Freesurfer exports > > > > I have a question about the pipeline of hippocampal sub-volume extraction: > > quantifyHAsubregions.sh hippoSf <T1>-<analysisID> <output_file> > <OPTIONAL_SUBJECTS_DIR> > > Let's say I have two different groups of analysisID such as sub-AVP???? > and sub-BAY???? > > > > I can pass a wildcard to extract the data of T2 scan from all sub-BAY???? > subjects by quantifyHAsubregions.sh hippoSf BAY*-T2 result.txt > > > > But Is there any way that I can extract the sub-volume from all the two > different group subjects at one time? Thanks. > > > > Best, > > Wei > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1ElFYk2W8crrhUek2tE-Mwm4-KKwBJnP7zRoOg--stEzWjkabm39zKvzlC7c2JLgfxaqDrZLJaC0s36qEXjzlV9iG2l_iQ5hnGbv2TsArJc7gETdY7zIqmW2DbabVT-wC14t7udnhdQYmYc1YSZQuE8zOvbwc6KK3rCE2kTocmhSQ1JVQTGjm68xA6KFku9a_nnfeHr2gYD8KVS6iA8W8vwONMObizCEhX7Teknr6lHQ8VH23h1EgQp6SvdEcCKFU8Xmjs6lH1dNM2f16GT04XQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
