Try
cd yoursubjectname/mri
mris_volmask --label_left_white 2 --label_left_ribbon 3
--label_right_white 41 --label_right_ribbon 42 --save_ribbon yoursubjectname
On 5/3/2021 4:31 PM, Caspar M. Schwiedrzik wrote:
External Email - Use Caution
Hi!
I am trying to make a ribbon.mgz from a non-human primate surface
recon that does not have an aseg. Following this prior discussion:
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be* Re: [Freesurfer] ribbon.mgz
Without aseg.mgz (mail-archive.com)
<https://secure-web.cisco.com/1ak2oe-adeCSsLNqdcSfpPz47btc0Bg4_-64m15yi4A3arakBiE7rQ-e9Ic--HcZjzBr8owRBFUicdouc7e2zl78qnX0T7FnwdllHDGAeM_4lAB6y3cenwxCzUG3lomlWl7BjXQbs4PesuZet8wvOXyZgrU9ePd4D9fZQEHvmpLBuI3G_a9NjVljMypuSefd0w8HYbmqeeqk3V6FQctpxtYq7VxlSRohysbd2HtGet4ulmKNUGr16_yWQ5tGzBFans_D-RTGtinwVa8sbtjRjqg/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg21349.html>
I tried mri_ribbon:
mri_ribbon ./surf/rh.white ./surf/rh.pial ./mri/orig.mgz
rh.ribbon.mgz
Attached is the output. It looks like it roughly follows the grey
matter, but especially the sulci seem to be filled. Unfortunately,
there is no help for mri_ribbon. Any advice on how to proceed? The
above mentioned discussion did not lead to a conclusion on how to get
a ribbon without aseg.
Thank you! Caspar
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