External Email - Use Caution Hi Doug, Thank you - we tried this. We do not have aseg and therefore mris_volmask will not do it. Caspar
On Mon, May 10, 2021 at 18:09 Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > Try > cd yoursubjectname/mri > mris_volmask --label_left_white 2 --label_left_ribbon 3 > --label_right_white 41 --label_right_ribbon 42 --save_ribbon yoursubjectname > > > On 5/3/2021 4:31 PM, Caspar M. Schwiedrzik wrote: > > External Email - Use Caution > Hi! > I am trying to make a ribbon.mgz from a non-human primate surface recon > that does not have an aseg. Following this prior discussion: *MailScanner > has detected a possible fraud attempt from "secure-web.cisco.com" claiming > to be* Re: [Freesurfer] ribbon.mgz Without aseg.mgz (mail-archive.com) > <https://secure-web.cisco.com/1VdhFmYoi68s4-hWpx9b4PfGpWUxkuRYYnXFCVuOciL9pr9mToywFyr2sqpYsJf65LEgYSj2hae4hAhYDMAB1jrUggSJWAytxF_88Z1j4Vz9TABX6c6YtM2b4eztak0ks45cDnxK237yA-5nOCA_oBbkEEN_wiSdupbhdIRKh06PnTvRTxsbF0Q42T3bPjecEYo88skGdbzWwu1s3FkEShAUCs4te0t0rtAoOpav5uVwzH1KK2aG-Llm18v6otSq2/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_1ak2oe-2DadeCSsLNqdcSfpPz47btc0Bg4-5F-2D64m15yi4A3arakBiE7rQ-2De9Ic-2D-2DHcZjzBr8owRBFUicdouc7e2zl78qnX0T7FnwdllHDGAeM-5F4lAB6y3cenwxCzUG3lomlWl7BjXQbs4PesuZet8wvOXyZgrU9ePd4D9fZQEHvmpLBuI3G-5Fa9NjVljMypuSefd0w8HYbmqeeqk3V6FQctpxtYq7VxlSRohysbd2HtGet4ulmKNUGr16-5FyWQ5tGzBFans-5FD-2DRTGtinwVa8sbtjRjqg_https-253A-252F-252Fwww.mail-2Darchive.com-252Ffreesurfer-2540nmr.mgh.harvard.edu-252Fmsg21349.html%26d%3DDwMDaQ%26c%3DJeTkUgVztGMmhKYjxsy2rfoWYibK1YmxXez1G3oNStg%26r%3DsgvCAzCi3iTXkTNRRVMpDnC6tu0lnijYpKXIX_UNme8%26m%3D2KmDkufF0O3Q4E6ttVSwu3wsGnvInZisgxeLGFgrfuU%26s%3D9xoJKKfQdjJpr9qu9W-wNKDJMWGsyXvHbQb5CcWiPTk%26e%3D> > I tried mri_ribbon: > > mri_ribbon ./surf/rh.white ./surf/rh.pial ./mri/orig.mgz > rh.ribbon.mgz > > Attached is the output. It looks like it roughly follows the grey matter, > but especially the sulci seem to be filled. Unfortunately, there is no help > for mri_ribbon. Any advice on how to proceed? The above mentioned > discussion did not lead to a conclusion on how to get a ribbon without > aseg. > Thank you! 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