Hello Freesurferers,
I’m trying to use a functional label (extracted from task functional BOLD
data), as a seed for functional connectivity.
I tried to use the fcseed-config with -roi , but when I ran the fcseed-sess, I
got this error: “If: expression syntax error”.
Could you please let me know what the problem is?
fcseed-config -roi ${label}.label -fcname ${label}.dat -fsd rest -rlf
restruns -mean -cfg ${label}.config -force
fcseed-sess -s ${subj} -d ../ -cfg /${label}.config
Thanks,
Mona
Zahra (Mona) Nasiriavanaki, M.D.
Postdoctoral Research Fellow
Department of Psychiatry
Massachusetts General Hospital
149 13th Street, 149-2615
Boston, MA, USA, 02129
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