you should not pass it a label. If you look at the help,
Functional ROI-based options
-roi fcconfig : as created by funcroi-confg
On 7/1/2021 10:58 AM, Nasiriavanaki, Zahra wrote:
Hello Freesurferers,
I’m trying to use a functional label (extracted from task functional
BOLD data), as a seed for functional connectivity.
I tried to use the fcseed-config with -roi , but when I ran the
fcseed-sess, I got this error: “If: expression syntax error”.
Could you please let me know what the problem is?
fcseed-config -roi ${label}.label -fcname ${label}.dat -fsd rest
-rlf restruns -mean -cfg ${label}.config -force
fcseed-sess -s ${subj} -d ../ -cfg /${label}.config
Thanks,
Mona
*Zahra (Mona) Nasiriavanaki, M.D.*
Postdoctoral Research Fellow
Department of Psychiatry
Massachusetts General Hospital
149 13th Street, 149-2615
Boston, MA, USA, 02129
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