External Email - Use Caution Dear Douglas N. GreveAs you commented, the command, you suggested, transformed well from the aparc+aseg.mgz with native space to MNI 152 space. I also tried the command to transform fiber bundles (the merged_avg33_mni_bbr.mgz), extracted from TRACULA, to MNI space. But, the transformed fiber bundles were not in MNI 152 space. Would you suggest the other transformation command or correct my mistake to MNI152 space for TRACULA fiber bundles in native space? Sincerely yours
Woo-Suk, Tae Seoul, Korea On Fri, Apr 28, 2023 at 10:26 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > External Email - Use Caution > > you mean you want to map the aparc+aseg.mgz from the subject space to the > cvs/mni152 space using the cvs transform? Try this > mri_convert aparc+aseg.mgz -at cvs.m3z aparc+aseg.from-subject-to-cvs.mgz > where cvs.m3z is the cvs nonlinear registratiopn > > On 4/21/2023 11:12 AM, Carlos Alcocer wrote: > > External Email - Use Caution > I registered a subject to mni space using the mri_cvs_register command > with the --mni flag. However, the output files do not include a new > aparc.a2009s+aseg.mgz. I wanted this atlas overlayed on the mni registered > subject so I could extract one of the labels. Is this possible? > > Thanks, > > Carlos > > > > > _______________________________________________ > Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has > detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1qie6YGV5WOOUaPgTp3nLby4aoCzwUv269sffHyGEcqPJwe3uDYfEGiqcOIBnmKbU_3XYcg04CQUxww_tF-Ldk3-VeAMylc2e1MUJo_5QbNceOPc80ni05XrW3wnjskHR1kZ3FVpfVA5TTGteVExVAMIjAt0cwCYZndXgFIZ0ISIWiawDkbq8YSAI5fn69zfHjAkQdzwouAYbuWV64_ZiD6gPV_Nk7yj-h1QF7r3jb7q-mglJTXHrYvgorDdv8sV3gPBE1pN1V9QfAjSrqTJsNe70dF-ufUPkadDV8Oxei_cnthbQH9xJDCa2VQi7fCnJ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > <https://secure-web.cisco.com/1PAGF-wl6Q5BX1xkQeXUzKFtmGWulSpFsJMnuSyMjKrDXwzejGcaWZ0CyGXTGB2fBWW4jWVHVvnO_sp2g2OtbjiiOg4JVmt7nSmch8nKDtflygTZme81_0fXhujwxuaZuWUNoH3xEB51-Jf_Pa2SxuVXbz8V_XlUrJqkUS42-rCBmz-QdvI529B84DCIDWd4uRdeerGZXSO9AvsWSAgMnORnU2yFdW8911Qz-ksnlarFdpj-_IjSR3-asnjeRuSh0aceQg_y_aeamEZABKqrFGw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1qie6YGV5WOOUaPgTp3nLby4aoCzwUv269sffHyGEcqPJwe3uDYfEGiqcOIBnmKbU_3XYcg04CQUxww_tF-Ldk3-VeAMylc2e1MUJo_5QbNceOPc80ni05XrW3wnjskHR1kZ3FVpfVA5TTGteVExVAMIjAt0cwCYZndXgFIZ0ISIWiawDkbq8YSAI5fn69zfHjAkQdzwouAYbuWV64_ZiD6gPV_Nk7yj-h1QF7r3jb7q-mglJTXHrYvgorDdv8sV3gPBE1pN1V9QfAjSrqTJsNe70dF-ufUPkadDV8Oxei_cnthbQH9xJDCa2VQi7fCnJ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1r65aE8cbo11SK2ln8ACiPDOOt-_ehx8QrAWE_EqApW1Bah546IROUE1oaDnSuSXeHe4my4r9c2VCeyhZQB1sb03ePPZztVeCCQZDXVSzP0XWUP-hMsk4fQwmQ4BtDnRwLsUwDCP1jf_fMQ4STkJTW9cMaYzIkRLtHTGgrnPAxlnJ2Ec4reOhChk1NMkf4lTzg9ItD0tjb_SgO1ngupNhsEUzWCO5RuDW13kB2eQw2wLGNZe4RMY3xY6CpnHGBZCoKsY4pKpB5hd7BSmL84rZntP3-GMh8hSJe6zSVfNiRggKrLhTsGY_QpuamPufHsDS/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1r65aE8cbo11SK2ln8ACiPDOOt-_ehx8QrAWE_EqApW1Bah546IROUE1oaDnSuSXeHe4my4r9c2VCeyhZQB1sb03ePPZztVeCCQZDXVSzP0XWUP-hMsk4fQwmQ4BtDnRwLsUwDCP1jf_fMQ4STkJTW9cMaYzIkRLtHTGgrnPAxlnJ2Ec4reOhChk1NMkf4lTzg9ItD0tjb_SgO1ngupNhsEUzWCO5RuDW13kB2eQw2wLGNZe4RMY3xY6CpnHGBZCoKsY4pKpB5hd7BSmL84rZntP3-GMh8hSJe6zSVfNiRggKrLhTsGY_QpuamPufHsDS/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > -- ---------------------------------------------------------------------------------------- Woo-Suk, Tae Ph.D. Research Professor Brain Convergence Research Center, Medical Research Center Anam Hospital, Korea University Medical Center, Seoul, Korea mobile: 82-10-9120-4629 office: 82-2-920-6831 email: ws...@korea.ac.kr, woosuk....@gmail.com, wo <woos...@naver.com>os...@gmail.com ----------------------------------------------------------------------------------------
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
