External Email - Use Caution
Hi Bruce,
Cool! Thank you so much.
Best wishes,
Hamied
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Fischl, Bruce R.,PHD
Sent: Tuesday, June 27, 2023 8:29 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied
You can look at
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and also recon-all -help and search for longitudinal.
Cheers
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Hamied Haroon
Sent: Tuesday, June 27, 2023 11:02 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Thank you so much!
Where do I find out how to run the longitudinal stream, please?
Best wishes,
Hamied
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Fischl, Bruce R.,PHD
Sent: Tuesday, June 27, 2023 4:00 PM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
you can also use our longitudinal stream that improves sensitivity and
reliability. Run it after you have run the cross-sectional - it will improve
your results considerably
cheers
Bruce
________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>>
Sent: Tuesday, June 27, 2023 10:11 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud
attempt from "secure-web.cisco.com" claiming to be
https://secure-web.cisco.com/1W-PKK0ASWic4qzjrOKq5S-p8QVnSUNTVyEJhXrbn-8TB0skUWltIfealH0aEgE6JkvXjd1dOtlfKgoNkTWBB74iGzYTOzywGHnl1dQrwuwQqNf8yYQ6EaLcNMk7FM3vZXS-U7D2G_U2kIScd1LUoqK2DboKyTrOqfToJaZPY_Mr3vZOgAnnHbu6gmNj-_yKIfqQWAyMNvK2k_KzgL7ZlsQpwzRFEhRUyk88Yh0BDrtgu48C5mq-o7Kr_-3jIkjsczzkwd74MwNKZK6myjrueo_trdTmn6nDfxMlLU7enJHVvMgMpmaMK7eRuAmk7K0mTgShztwatGzymnpiTM9sj-A/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats
[secure-web.cisco.com]
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to generate the stats.
Best,
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of Hamied Haroon
Sent: Tuesday, June 27, 2023 7:12 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a
neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness
of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
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