External Email - Use Caution I want to use the intensity of the macromolecular proton fraction (MPF). I want to compare the intensity of the MPF between two groups.
On Wed, Jan 24, 2024 at 6:11 PM Fischl, Bruce R.,PHD < bfis...@mgh.harvard.edu> wrote: > It is whatever volume you gave as input to recon-all. If you tell us which > statistics you want to regenerate for another volume we can tell you know > what commands to run. > > > cheers > > Bruce > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI > *Sent:* Wednesday, January 24, 2024 9:05 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Freesurfer Intensity representation > > > > * External Email - Use Caution * > > Hi, > > > > Please I made an initial enquiry about using freesurfer for MPF maps. The > feedback was that I register the MPF maps on their corresponding T1 images > using multimodal registration. I used FSL to do the multimodal registration > and then use recon-all in freesurfer. > > Now I want to know what the intensity and the volume of the output in the > aseg file represent. Is it the intensity of the MPF or the TI and MPF? > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1Ypg-zwheBKht8ekirV1QSi3Ww1BitrZSZmzFs3aCtC4rSyz-3QJDS-q85nB5BGniTZrZk7JoSrfQwyAgY-DAqya8tXHAorn5QNNtX0Mx4fKdKmoTgUFKPyvqxiqxonojCWgrvQTEm-tKEGdpgrIEsJDzNZBgo50YdaqQqklQz1-9jeVajqhjpFoR7cixMxE62nJ9OzPNd_1I3Bv3UwMUGtp0O6H1msOvct282P3QjhU8ZNTwE1NUl-gjSCBxBvRtWWOtwMJtGIuK0uAAzAZBLOotT34Iu_kNArtLaLULCiYgyBQHsQpkjMwh-NECoFtn_ezsQ8a0rpeYFr70qJUOVg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1DENwi_iVclyVgUabtmFByrIdj3lGQRGH4gAIWcUq7js77v0k9nAwocRtDhzYbWKgBDh5fiOvwpq-mE9wTYFeWzFLucR7JWRogP8d-JsGj1tNqKB4Zz94G-JlkPIjGrx0LtwRLs635_gzTsA2Zcr4sP3IKd6BZlTmqq0tpPmljOP-wBWz2w1HfgweaUN9wlvtUdM18A5yk3ug1wwWxCkLXxJX3DkkGTIotEfsOnskiCmPlwe86UK0Cq6V4CcMiHGfkBQuEiJTIuzpdTeFzVCaD6WXyUJPH3IN3NnebCoB8TI3QhJMpSV4UkQUrJDlRjfTs1tBv94TM7eX3gs1x6DTzw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1DENwi_iVclyVgUabtmFByrIdj3lGQRGH4gAIWcUq7js77v0k9nAwocRtDhzYbWKgBDh5fiOvwpq-mE9wTYFeWzFLucR7JWRogP8d-JsGj1tNqKB4Zz94G-JlkPIjGrx0LtwRLs635_gzTsA2Zcr4sP3IKd6BZlTmqq0tpPmljOP-wBWz2w1HfgweaUN9wlvtUdM18A5yk3ug1wwWxCkLXxJX3DkkGTIotEfsOnskiCmPlwe86UK0Cq6V4CcMiHGfkBQuEiJTIuzpdTeFzVCaD6WXyUJPH3IN3NnebCoB8TI3QhJMpSV4UkQUrJDlRjfTs1tBv94TM7eX3gs1x6DTzw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
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