External Email - Use Caution
Hi,
I have installed FreeSurfer (freesurfer-linux-centos7_x86_64-7.4.1) into my
research group's directory on the University cluster, using the tar archive. I
source it with
GROUPDIR=<path_to_group_directory>
export FREESURFER_HOME=$GROUPDIR/software/freesurfer
. $FREESURFER_HOME/SetUpFreeSurfer.sh
export PATH=$FREESURFER_HOME/bin:${PATH}
and am trying to run recon-all like so:
recon-all -s <subj_id> -i <path_to_T1_data> -T2 <path_to_T2_data> -T2pial
-autorecon-all
However, FreeSurfer keeps giving the error:
ERROR: cannot find AntsN4BiasFieldCorrectionFs in path
when AntsN4BiasFieldCorrectionFs is definitely in freesurfer/bin
Any insight into the matter would be greatly appreciated 🙂
Regards,
Christine
The University of Edinburgh is a charitable body, registered in Scotland, with
registration number SC005336. Is e buidheann carthannais a th’ ann an Oilthigh
Dhùn Èideann, clàraichte an Alba, àireamh clàraidh SC005336.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
