Your recon-all should have generated the following label files in your subject’s label directory: label/?h.FG1.mpm.vpnl.label label/?h.FG2.mpm.vpnl.label label/?h.FG3.mpm.vpnl.label label/?h.FG4.mpm.vpnl.label label/?h.hOc1.mpm.vpnl.label label/?h.hOc2.mpm.vpnl.label label/?h.hOc3v.mpm.vpnl.label label/?h.hOc4v.mpm.vpnl.label
I don’t know how you got your Freesurfer distributions. But it looks like your average/colortable_vpnl.txt is out of sync with mris_label2annot. 1. download these two colortables from Freesurfer repo - https://github.com/freesurfer/freesurfer.git distribution/average/colortable_BA_thresh.txt distribution/average/colortable_vpnl.txt 2. copy them to your average/ directory Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of LYU, TIANXIANG Sent: Tuesday, May 7, 2024 12:30 AM To: freesurfer@nmr.mgh.harvard.edu Cc: 内田航 <w-uch...@juntendo.ac.jp> Subject: [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to process recon-all commands, but in mris_label2annot command: ERROR: FG1.mpm.vpnl not found in CTAB /vol0004/hp200139/data/u12257/freesurfer/average/colortable_vpnl.txt Command exited with non-zero status 1 @#@FSTIME 2024:05:07:07:05:22 mris_label2annot N 26 e 4.35 S 0.34 U 2.65 P 68% M 203264 F 4 R 3608 W 0 c 0 w 1728 I 18304 O 0 L 0.92 0.91 0.96 I've checked the directory, but find nothing strange. (file colortable_vpnl.txt exists) I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use. Sincerely, Tianxiang Lyu Graduate School of Medicine, Juntendo University
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