External Email - Use Caution
I use this on our HPC:
apptainer run --cleanenv --bind ${MRIS}/data:/data:ro --bind
${MRIS}/derivatives/fmriprep:/outputs --bind ${MRIS}/fmriprep_work:/work ${APP}
/data /outputs participant --participant_label ${Subject} --fs-license-file
${HOME}/license.txt -w /work --stop-on-first-crash --ignore slicetiming
--cifti-output --output-spaces fsnative fsaverage MNI152NLin6Asym:res-2
This assumes license.txt is in my home directory.
-Dianne
Dianne Patterson, Ph.D<https://profiles.arizona.edu/person/dkp>
d...@arizona.edu
Office: BSRL, Room 235
RII Neuroimaging Staff Scientist
Program Coordinator Neuroimaging Methods
Certificate<https://cogsci.arizona.edu/programs/certificate>
Cognitive Science GIDP affiliate member
Faculty Lead OpenClass.ai<https://openclass.ai>
Mastodon: @d...@scicomm.xyz
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