Hi - the altPromoter extends from 100 bases before to 50 bases after the transcription start site.
On Mar 29, 2010, at 9:09 PM, Jing Zhang wrote: > Hello, > > This is Jing from USC Computational Molecular Biology department. > Recently I > have been using the UCSC altEvent information for human and it is > quite > helpful. However, I have some confusion about the altPromoter event. > For the > altFivePrime events, the start and end positions means two possible > five > prime side. Then how about the altPromoter start and end points? Are > they > two possible positions or the starting and ending points of one > region? > Besides, it is very interesting that the difference of the starting > and > ending positions of each altPromoter line are all 150. Why it is > like this? > > I tried to read the description of the data and searched for some > presentations of it, but still can not understand the altPromoter > lines. > Would you please provide me some information about these problems? > Many > thanks in advance. > > Best, > -- > Jing > > ----------------------------------------------------------- > Electrical Engineering & Computational Molecular Biology > University of Southern California > Office: MCB 416D, (213) 821-4003, > ____________________________________ > Cell: (865)-368-5086 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
