Hello Rex,
The Table Browser ("Tables" on the blue bar on the top of the main page) can be
used for this task.
Use the following settings:
clade: Mammal; genome: Human; assembly: Mar. 2006; group: Genes and Gene
Prediction Tracks; track: UCSC Genes; table: knownGene; region: "genome",
output format: "sequence" and click "get output". On the next page you can
select your promotor/upsteam/downstream bases. Enter "500" into each box.
Finally click "get sequence".
You may also filter your results in the Table Browser before you output
sequence.
I hope this information is helpful to you. Please don't hesitate to contact us
again if you require further assistance.
Kayla Smith
UCSC Genome Bioinformatics Group
----- "Qing Lu" <[email protected]> wrote:
> Dear Madam/Sir,
> I am intending to obtain the sequence of promoter region, about -/+ 500bp
> around the transcription start site. Would you please tell me how to get
> those sequence in batch? Thanks a lot.
>
> --
> Best regards,
> Rex
> _______________________________________________
> Genome maillist - [email protected]
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>
_______________________________________________
Genome maillist - [email protected]
http://www.soe.ucsc.edu/mailman/listinfo/genome
