Dear colleagues, My name is Yulia Medvedeva. I'm research fellow in Vavilov Institute of General Genetics, Moscow, Russia. Now I'm trying to compare different algorithms of CpG islands prediction. So I have some questions about UCSC CpG islands track. http://genome.ucsc.edu/cgi-bin/hgTables?db=hg18&hgta_group=regulation&hgta_track=cpgIslandExt&hgta_table=cpgIslandExt&hgta_doSchema=describe+table+schema
Is there any possibility to download your program and test it with different parameters? If not, could you please explain me the algorithms in more details? For example, did you filter CpG islands intersecting with Alu-repeats or any other types of repeats? May be you did any other additional corrections after prediction? Thank you in advance. Best regards, Yulia _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
