Hi Yulia, We do have the source code available for non-profit use. I will send it to you off of the mailing list.
Please also see this previously answered question for some additional answers to your question: https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-September/002087.html Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Yulia Medvedeva wrote, On 03/04/11 05:47: > Dear colleagues, > > My name is Yulia Medvedeva. I'm research fellow in Vavilov Institute > of General Genetics, Moscow, Russia. Now I'm trying to compare > different algorithms of CpG islands prediction. So I have some > questions about UCSC CpG islands track. > http://genome.ucsc.edu/cgi-bin/hgTables?db=hg18&hgta_group=regulation&hgta_track=cpgIslandExt&hgta_table=cpgIslandExt&hgta_doSchema=describe+table+schema > > Is there any possibility to download your program and test it with > different parameters? If not, could you please explain me the > algorithms in more details? For example, did you filter CpG islands > intersecting with Alu-repeats or any other types of repeats? May be > you did any other additional corrections after prediction? > > Thank you in advance. > Best regards, > Yulia > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
