I have a list of 40,000 SNPs (scattered throughout the human genome). I would like to attribute conservation scores to each variant. I would like to use GERP scores. Realising that there is no MySQL function for GERP, I am guessing I will write a PERL script to match a downloaded 'GERP' file to my queries. Is there a way of downloading GERP scores for hg19? I know this can be done manually via 'Tables' - but guess and FTP server would be the way to do this? What do you suppose is the best way?
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