Hi Chris, Our ftp server is available here: ftp://hgdownload.cse.ucsc.edu/goldenPath/
We also have a publicly accessible MySQL server, which may be of use: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29 Please note the MySQL access guidelines on the above page if you go that route. - Greg On 5/14/12 6:15 AM, Christopher Medway wrote: > I have a list of 40,000 SNPs (scattered throughout the human genome). I would > like to attribute conservation scores to each variant. I would like to use > GERP scores. Realising that there is no MySQL function for GERP, I am > guessing I will write a PERL script to match a downloaded 'GERP' file to my > queries. Is there a way of downloading GERP scores for hg19? I know this can > be done manually via 'Tables' - but guess and FTP server would be the way to > do this? What do you suppose is the best way? > > Best Wishes > Chris > This message and any attachment are intended solely for the addressee and may > contain confidential information. If you have received this message in error, > please send it back to me, and immediately delete it. Please do not use, > copy or disclose the information contained in this message or in any > attachment. Any views or opinions expressed by the author of this email do > not necessarily reflect the views of the University of Nottingham. > > This message has been checked for viruses but the contents of an attachment > may still contain software viruses which could damage your computer system: > you are advised to perform your own checks. Email communications with the > University of Nottingham may be monitored as permitted by UK legislation. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
