Hi Chris, This download file may be able to help you: http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/All_hg19_RS.bw
You may also want to use our utilities to extract the data: bigWigToBedGraph or bigWigToWig (http://hgdownload.cse.ucsc.edu/admin/exe/) Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 5/17/2012 4:22 AM, Christopher Medway wrote: > I have a list of 40,000 SNPs (scattered throughout the human genome). I would > like to attribute conservation scores to each variant. I would like to use > GERP scores. > > > > However, looking at your DB schema, I understand that using MySQL will not be > an option to interrogate specific base-pair coordinates/SNPs and obtain GERP. > Furthermore, I have tried to locate the GEPR scores file on you ftp, but this > data does not appear to be available (or at least I cannot find it). > > > Can you suggest a way I can locate GERP information for either i) SNPs 'on > the fly' (MySQL or API), or ii) download genome-wide GERP data. > > Best wishes > Chris > > This message and any attachment are intended solely for the addressee and may > contain confidential information. If you have received this message in error, > please send it back to me, and immediately delete it. Please do not use, > copy or disclose the information contained in this message or in any > attachment. Any views or opinions expressed by the author of this email do > not necessarily reflect the views of the University of Nottingham. > > This message has been checked for viruses but the contents of an attachment > may still contain software viruses which could damage your computer system: > you are advised to perform your own checks. Email communications with the > University of Nottingham may be monitored as permitted by UK legislation. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
