Well just some testing after I cleaned out our data. Logged back into babel and started clicking on ontologies. First one I tried “CMH: Diagnosis” thru a “Database Error” also. But “CMH: Demographics” worked.
Weird but all our ontologies are still there at the top level and still throw “Database Error” when I expand them. G From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu> on behalf of "Kowalski, George" <gkowal...@mcw.edu> Date: Wednesday, April 12, 2017 at 8:04 AM To: "gpc-dev@listserv.kumc.edu" <gpc-dev@listserv.kumc.edu> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient I’ve emptied our terms table until such time as we can determine what’s going wrong with the import process. From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu<mailto:gpc-dev-boun...@listserv.kumc.edu>> on behalf of "Kowalski, George" <gkowal...@mcw.edu<mailto:gkowal...@mcw.edu>> Date: Wednesday, April 12, 2017 at 8:00 AM To: "gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>" <gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient All, I reloaded our ontology here at MCW on Monday , It seemed to go well via phpPgAdmin, but Now I can’t browse our ontology without a “database error” coming back . From: Gpc-dev <gpc-dev-boun...@listserv.kumc.edu<mailto:gpc-dev-boun...@listserv.kumc.edu><mailto:gpc-dev-boun...@listserv.kumc.edu><mailto:gpc-dev-boun...@listserv.kumc.edu%3e>> on behalf of "Klann, Jeffrey G." <jeff.kl...@mgh.harvard.edu<mailto:jeff.kl...@mgh.harvard.edu><mailto:jeff.kl...@mgh.harvard.edu><mailto:jeff.kl...@mgh.harvard.edu%3e>> Date: Tuesday, April 11, 2017 at 10:37 PM To: "gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu><mailto:gpc-dev@listserv.kumc.edu><mailto:gpc-dev@listserv.kumc.edu%3e>" <gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu><mailto:gpc-dev@listserv.kumc.edu><mailto:gpc-dev@listserv.kumc.edu%3e>>, "jay.peder...@unmc.edu<mailto:jay.peder...@unmc.edu><mailto:jay.peder...@unmc.edu><mailto:jay.peder...@unmc.edu%3e>" <jay.peder...@unmc.edu<mailto:jay.peder...@unmc.edu><mailto:jay.peder...@unmc.edu><mailto:jay.peder...@unmc.edu%3e>>, "campb...@unmc.edu<mailto:campb...@unmc.edu><mailto:campb...@unmc.edu><mailto:campb...@unmc.edu%3e>" <campb...@unmc.edu<mailto:campb...@unmc.edu><mailto:campb...@unmc.edu><mailto:campb...@unmc.edu%3e>>, "huhick...@nebraskamed.com<mailto:huhick...@nebraskamed.com><mailto:huhick...@nebraskamed.com><mailto:huhick...@nebraskamed.com%3e>" <huhick...@nebraskamed.com<mailto:huhick...@nebraskamed.com><mailto:huhick...@nebraskamed.com><mailto:huhick...@nebraskamed.com%3e>>, "dconno...@kumc.edu<mailto:dconno...@kumc.edu><mailto:dconno...@kumc.edu><mailto:dconno...@kumc.edu%3e>" <dconno...@kumc.edu<mailto:dconno...@kumc.edu><mailto:dconno...@kumc.edu><mailto:dconno...@kumc.edu%3e>>, "rwait...@kumc.edu<mailto:rwait...@kumc.edu><mailto:rwait...@kumc.edu><mailto:rwait...@kumc.edu%3e>" <rwait...@kumc.edu<mailto:rwait...@kumc.edu><mailto:rwait...@kumc.edu><mailto:rwait...@kumc.edu%3e>> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient It is *extremely* slow to browse. Can you check your indexes? I’d like to explore your hard work but it’s unusable right now. ( I tried a few random other trees and they were also unbrowsably-slow. Is there an epidemic of bad indexes on babel? ) Thanks, Jeffrey Klann, PhD Instructor of Medicine, Harvard Medical School Instructor in Investigation, Massachusetts General Hospital On 4/11/17, 12:00 PM, "GPC Informatics" <d...@madmode.com<mailto:d...@madmode.com><mailto:d...@madmode.com><mailto:d...@madmode.com><mailto:d...@madmode.com%3e><mailto:d...@madmode.com%3e%3cmailto:d...@madmode.com%3e%3cmailto:d...@madmode.com%3e%3e>> wrote: #280: Medication ontology orgainzed by ingredient -------------------------+---------------------------- Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major | Milestone: snow-shrine-2 Component: data-stds | Resolution: Keywords: | Blocked By: Blocking: | -------------------------+---------------------------- Comment (by dconnolly): Replying to [comment:19 campbell]: > SCILHS/Medication metadata issues addressed with load to BABEL toiday: Which folder has the updated medication metadata? is it **UNMC: Medications (UNMC)**? > • (therefore) with VA drug classes as sole top-level ontology, not all clinical formulations or packages can be deployed So this is a wholesale re-organization of the ontology? 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