rekado pushed a commit to branch master
in repository guix.
commit 764e2dba209b3283ebe35a22b49dc4771d42f181
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Jun 5 01:50:03 2021 +0200
gnu: r-flowworkspace: Update to 4.4.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
---
gnu/packages/bioconductor.scm | 17 ++++-------------
1 file changed, 4 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 49d39fa..b1ccf01 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9569,27 +9569,16 @@ for other R packages to compile and link against.")
(define-public r-flowworkspace
(package
(name "r-flowworkspace")
- (version "4.2.0")
+ (version "4.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version))
(sha256
(base32
- "19svh32jq1dpq3ayhpd5r8bw0iax8d9kdvpvc23gx2pf16g1j5ag"))))
+ "1a9qb2dcvwgb3z0vdbbzn1rzy77d3da72kirs272344hdx9b2cx9"))))
(properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-linking
- (lambda _
- (substitute* "src/Makevars"
- ;; This is to avoid having a plain directory on the list of
- ;; libraries to link.
- (("\\{h5lib\\}" match)
- (string-append match "/libhdf5.a")))
- #t)))))
(propagated-inputs
`(("r-aws-s3" ,r-aws-s3)
("r-aws-signature" ,r-aws-signature)
@@ -9598,6 +9587,7 @@ for other R packages to compile and link against.")
("r-biocgenerics" ,r-biocgenerics)
("r-cytolib" ,r-cytolib)
("r-data-table" ,r-data-table)
+ ("r-delayedarray" ,r-delayedarray)
("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr)
("r-flowcore" ,r-flowcore)
@@ -9614,6 +9604,7 @@ for other R packages to compile and link against.")
("r-rgraphviz" ,r-rgraphviz)
("r-rhdf5lib" ,r-rhdf5lib)
("r-rprotobuflib" ,r-rprotobuflib)
+ ("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-xml" ,r-xml)))
(native-inputs
