rekado pushed a commit to branch master
in repository guix.
commit f0f839c1240d8d42bab6351ab463d0ca38985e2f
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Jun 5 08:49:39 2021 +0200
gnu: r-deepsnv: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioconductor.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 34df07c..a7b4ade 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1442,17 +1442,15 @@ biological sequences.")
(define-public r-deepsnv
(package
(name "r-deepsnv")
- (version "1.36.0")
+ (version "1.38.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "deepSNV" version))
(sha256
(base32
- "1lbvx9liql8fkb4y020kwpgp61vzg67cy640dc4kybglcw9dx6j0"))))
+ "0zz56hf417m7bgg2g2wpbaik30pi6h2nam1n5bviqgdn4mv8n0bs"))))
(properties `((upstream-name . "deepSNV")))
(build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
@@ -1461,6 +1459,8 @@ biological sequences.")
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)
("r-vgam" ,r-vgam)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/gerstung-lab/deepSNV/";)
(synopsis "Detection of subclonal SNVs in deep sequencing data")
(description
