Hi Jenn, I checked it once more after having waited for a few days. The numbers remain incomplete. Essentially the data are not there for a good amount of subjects, it seems at least all MEG subjects from the 900 release. Can you confirm this? Or am I missing something?
Cheers, Denis On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann < denis.engem...@gmail.com> wrote: > Great, thanks for the update! Something seems to have moved indeed, but > not too much apparently. I just checked some 90 MEG subjects, and still the > structural preprocessing is not fully complete. I'm not sure though if this > may now have different reasons. > > Consider this script where I go through the MEG subjects to see what is > available. > https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 > > For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the > others only seem to have "stats". Is this expected? > > Denis > > On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <el...@pcg.wustl.edu> wrote: > >> Hi Denis and all HCP-Users, >> >> We now have all Structural Extended Preprocessed data packages available >> for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 >> subjects) in ConnectomeDB. Yay! >> >> >> >> The structural extended packages includes outputs from Freesurfer that >> are not in the main Structural Preprocessed packages. The structural >> extended packages are included in the S900 Connectome in a Box, which is >> available for order now. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Scientific Outreach, Human Connectome Project >> >> >> Washington University School of Medicine >> >> Department of Neuroscience, Box 8108 >> >> >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> >> e...@wustl.edu >> www.humanconnectome.org >> >> >> >> *From:* Denis-Alexander Engemann [mailto:denis.engem...@gmail.com] >> *Sent:* Monday, April 04, 2016 3:30 AM >> *To:* Jennifer Elam; hcp-users@humanconnectome.org >> >> >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> Dear Jenn, >> >> >> >> thanks for letting me know and for looking into it! >> >> >> >> Cheers, >> >> Denis >> >> On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <el...@pcg.wustl.edu> wrote: >> >> Hi Denis, >> >> We’ve looked into the problem and have found that the structural extended >> data for 178 newly added subjects for S900 was inadvertently unpackaged and >> therefore not available for download in ConnectomeDB. We are working on >> fixing this and we’ll send out another message when its available. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Outreach Coordinator, Human Connectome Project >> Washington University School of Medicine >> Department of Anatomy and Neurobiology, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> el...@pcg.wustl.edu >> www.humanconnectome.org >> >> >> >> *From:* hcp-users-boun...@humanconnectome.org [mailto: >> hcp-users-boun...@humanconnectome.org] *On Behalf Of *Denis-Alexander >> Engemann >> *Sent:* Thursday, March 31, 2016 3:24 AM >> *To:* hcp-users@humanconnectome.org >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> It turns out that the structural extended preprocessing package is not >> available for the new subjects. >> >> >> >> Is there any fix planned for this or is there a way to at least get some >> of the outputs from 'surf' and 'mri'? >> >> >> >> Denis >> >> >> >> On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < >> denis.engem...@gmail.com> wrote: >> >> Dear HCPers, >> >> >> >> it seems that the freesurfer files included in the structural extended >> subjects are not available on aws for the HCP_900 subjects, at least not >> for the MEG subjects. I am referring to the following outputs: >> >> >> >> ${subject}/T1w/${subject}/mri >> >> ${subject}/T1w/${subject}/surf >> >> ${subject}/T1w/${subject}/label >> >> >> >> Can anyone confirm? >> >> >> >> Cheers, >> >> Denis >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
