Hi Jenn, in the mean time we have tried downloading some of the packages available via connectome DB. Using the most recent version of the Aspera client, trying 3 different browsers, 3 different computers at different locations including Mac and Windows the download never started (progress bar frozen at 0). Would you have any suggestions how to access the files? Or has there been any progress with updating the files on AWS?
Best, Denis On Wed, Apr 20, 2016 at 1:56 AM Denis-Alexander Engemann < denis.engem...@gmail.com> wrote: > Hi Jenn, > > thanks for your reply, this is good news! > > Denis > > On Tue, Apr 19, 2016 at 7:10 PM Jennifer Elam <el...@pcg.wustl.edu> wrote: > >> Hi Denis and all, >> >> Sorry for the confusion. The structural extended packages have been >> fixed/updated in *ConnectomeDB* for download there and in the CinaB hard >> drives being ordered, but we are doing some further checking/fixing before >> we go through the several day process of updating all of the data in Amazon >> S3. We’ll send out another announcement when S3 is up to date. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Scientific Outreach, Human Connectome Project >> Washington University School of Medicine >> Department of Neuroscience, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> e...@wustl.edu >> www.humanconnectome.org >> >> >> >> *From:* Denis-Alexander Engemann [mailto:denis.engem...@gmail.com] >> *Sent:* Monday, April 18, 2016 3:42 PM >> >> >> *To:* Jennifer Elam; hcp-users@humanconnectome.org >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> Hi Jenn, >> >> >> >> I checked it once more after having waited for a few days. The numbers >> remain incomplete. Essentially the data are not there for a good amount of >> subjects, it seems at least all MEG subjects from the 900 release. Can you >> confirm this? Or am I missing something? >> >> >> >> Cheers, >> >> Denis >> >> >> >> On Sat, Apr 16, 2016 at 11:51 AM Denis-Alexander Engemann < >> denis.engem...@gmail.com> wrote: >> >> Great, thanks for the update! Something seems to have moved indeed, but >> not too much apparently. I just checked some 90 MEG subjects, and still the >> structural preprocessing is not fully complete. I'm not sure though if this >> may now have different reasons. >> >> >> >> Consider this script where I go through the MEG subjects to see what is >> available. >> >> https://gist.github.com/dengemann/e6a76197fb07c543120f8cc35ca495e1 >> >> >> >> For the HCP500 subjects I find "mri", "surf" and "label" subfoldes, the >> others only seem to have "stats". Is this expected? >> >> >> >> Denis >> >> >> >> On Fri, Apr 15, 2016 at 8:55 PM Jennifer Elam <el...@pcg.wustl.edu> >> wrote: >> >> Hi Denis and all HCP-Users, >> >> We now have all Structural Extended Preprocessed data packages available >> for ALL 900 Subjects Release (S900) subjects with structural MRI data (897 >> subjects) in ConnectomeDB. Yay! >> >> >> >> The structural extended packages includes outputs from Freesurfer that >> are not in the main Structural Preprocessed packages. The structural >> extended packages are included in the S900 Connectome in a Box, which is >> available for order now. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Scientific Outreach, Human Connectome Project >> >> >> Washington University School of Medicine >> >> Department of Neuroscience, Box 8108 >> >> >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> >> e...@wustl.edu >> www.humanconnectome.org >> >> >> >> *From:* Denis-Alexander Engemann [mailto:denis.engem...@gmail.com] >> *Sent:* Monday, April 04, 2016 3:30 AM >> *To:* Jennifer Elam; hcp-users@humanconnectome.org >> >> >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> Dear Jenn, >> >> >> >> thanks for letting me know and for looking into it! >> >> >> >> Cheers, >> >> Denis >> >> On Fri, Apr 1, 2016 at 9:59 PM Jennifer Elam <el...@pcg.wustl.edu> wrote: >> >> Hi Denis, >> >> We’ve looked into the problem and have found that the structural extended >> data for 178 newly added subjects for S900 was inadvertently unpackaged and >> therefore not available for download in ConnectomeDB. We are working on >> fixing this and we’ll send out another message when its available. >> >> >> >> Best, >> >> Jenn >> >> >> >> Jennifer Elam, Ph.D. >> Outreach Coordinator, Human Connectome Project >> Washington University School of Medicine >> Department of Anatomy and Neurobiology, Box 8108 >> 660 South Euclid Avenue >> St. Louis, MO 63110 >> 314-362-9387 >> el...@pcg.wustl.edu >> www.humanconnectome.org >> >> >> >> *From:* hcp-users-boun...@humanconnectome.org [mailto: >> hcp-users-boun...@humanconnectome.org] *On Behalf Of *Denis-Alexander >> Engemann >> *Sent:* Thursday, March 31, 2016 3:24 AM >> *To:* hcp-users@humanconnectome.org >> *Subject:* Re: [HCP-Users] structrual extended package for HCP_900 >> subjects on aws >> >> >> >> It turns out that the structural extended preprocessing package is not >> available for the new subjects. >> >> >> >> Is there any fix planned for this or is there a way to at least get some >> of the outputs from 'surf' and 'mri'? >> >> >> >> Denis >> >> >> >> On Tue, Mar 29, 2016 at 10:35 AM Denis-Alexander Engemann < >> denis.engem...@gmail.com> wrote: >> >> Dear HCPers, >> >> >> >> it seems that the freesurfer files included in the structural extended >> subjects are not available on aws for the HCP_900 subjects, at least not >> for the MEG subjects. I am referring to the following outputs: >> >> >> >> ${subject}/T1w/${subject}/mri >> >> ${subject}/T1w/${subject}/surf >> >> ${subject}/T1w/${subject}/label >> >> >> >> Can anyone confirm? >> >> >> >> Cheers, >> >> Denis >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
