Brice,
thank you very much for the offer. I attached the xml file
..
* hwloc 1.11.1 has encountered what looks like an error from the
operating system.
*
* L3 (cpuset 0x000003f0) intersects with NUMANode (P#0 cpuset
0x0000003f) without inclusion!
* Error occurred in topology.c line 981
*
..
So if you can affort the time, I apprechiate it very much!
Fabian
On 10/27/2015 09:52 AM, Brice Goglin wrote:
Hello
This bug is about L3 cache locality only, everything else should be
fine, including cache sizes. Few applications use that locality
information, so I assume it doesn't matter for PETSc scaling.
We can work around the bug by loading a XML topology. There's no easy
way to build that correct XML, but I can do it manually if you send your
current broken topology (lstopo foo.xml and send this foo.xml).
Brice
Le 27/10/2015 09:43, Fabian Wein a écrit :
Hello,
I'm new to the list and new to the mpi-business, too.
Our 4*12 Opteron 6238 system is very similar to the one from the
original poster and I get the same error message.
Any use in posting my logs?
I compiled the latest hwloc, no change. our System is Ubunut 14.4 LTS
with kernel 3.13. and our bios is not updated.
The system scales very fine with OpenMP but fails to give any
realistic scaling using PETSc (both for the standard
streaming benchmark and quick tests with a given application).
As far as I understand the system is fine, just the information
gathering fails, right?!
Do you know if the hwloc issue relates with our poor PETSc scaling? Is
there a way to configure the topology
manually?
To me it appears that an bios update wouldn't help, right?! I wouldn't
try it if it is not nesessary. I'm a user with sudo accesss,
not an administrator but we have no admin for the system.
Thanks,
Fabian
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--
Dr. Fabian Wein, University of Erlangen-Nuremberg
Department of Mathematics/ Excellence Cluster for Engineering of
Advanced Materials
phone: +49 9131 85 20849
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE topology SYSTEM "hwloc.dtd">
<topology>
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<page_type size="4096" count="0"/>
<page_type size="2097152" count="0"/>
<info name="DMIProductName" value="H8QG6"/>
<info name="DMIProductVersion" value="1234567890"/>
<info name="DMIBoardVendor" value="Supermicro"/>
<info name="DMIBoardName" value="H8QG6"/>
<info name="DMIBoardVersion" value="1234567890"/>
<info name="DMIBoardAssetTag" value="1234567890"/>
<info name="DMIChassisVendor" value="Supermicro"/>
<info name="DMIChassisType" value="17"/>
<info name="DMIChassisVersion" value="1234567890"/>
<info name="DMIChassisAssetTag" value="1234567890"/>
<info name="DMIBIOSVendor" value="American Megatrends Inc."/>
<info name="DMIBIOSVersion" value="2.0a "/>
<info name="DMIBIOSDate" value="10/28/2011"/>
<info name="DMISysVendor" value="Supermicro"/>
<info name="Backend" value="Linux"/>
<info name="OSName" value="Linux"/>
<info name="OSRelease" value="3.13.0-66-generic"/>
<info name="OSVersion" value="#108-Ubuntu SMP Wed Oct 7 15:20:27 UTC 2015"/>
<info name="HostName" value="leo"/>
<info name="Architecture" value="x86_64"/>
<info name="hwlocVersion" value="1.11.1"/>
<info name="ProcessName" value="lstopo"/>
<distances nbobjs="8" relative_depth="2" latency_base="10.000000">
<latency value="1.000000"/>
<latency value="1.600000"/>
<latency value="1.600000"/>
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</distances>
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<info name="CPUVendor" value="AuthenticAMD"/>
<info name="CPUFamilyNumber" value="21"/>
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<info name="LinuxDeviceID" value="8:0"/>
<info name="Model" value="Hitachi_HUA723030ALA640"/>
<info name="Revision" value="MKAOA5C0"/>
<info name="SerialNumber" value="MK0331YHGZHTBA"/>
<info name="Type" value="Disk"/>
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