Angel Herraez wrote: >The problem is, >- with traceAlpha ON, the base in residue (j) connects to the P atom >in residue (j+1). This should be fixed. >- with traceAlpha OFF, the base (j) connects to the midpoint between >P atoms (j) and (j+1). This is OK, as it would be (j-1) and (j) > >Now, with your new 11.1.3 version this is solved: > >- with traceAlpha ON (default), the base in residue (j) connects to >the >midpoint between P atoms (j) and (j+1) [if j+1 is not available, to >the last P (j) atom itself] **good!** >- with traceAlpha OFF, the base connects to the same point >[except for the last one if P(j+1) is missing, it extrapolates to >some midpoint **OK, no big deal** > > > I'll look into that.
>I understand this change will be incorporated into 11.0 too. Good! >I'm closing an update of my website and don't have the time to >investigate into the interesting navigation mode, but I think this >cartoon behaviour is bad as it is in 11.0.RC3. > > > right - 11.0 fix is checked in, but not released by Nico. >There is still the problem of the 5'-terminal portion being colored >red instead of orange when that P atom is missing; likely due to >specific models, not that important. > > > I'll check into that. Is a bit strange. Bob ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
