Angel Herraez and Bob Hanson wrote: > >Now, with your new 11.1.3 version this is solved: > > > >- with traceAlpha ON (default), the base in residue (j) connects to > >the > >midpoint between P atoms (j) and (j+1) [if j+1 is not available, to > >the last P (j) atom itself] **good!** > >- with traceAlpha OFF, the base connects to the same point > >[except for the last one if P(j+1) is missing, it extrapolates to > >some midpoint **OK, no big deal** > > > I'll look into that.
I think everyting is OK as it is. No need to bother. > >There is still the problem of the 5'-terminal portion being colored > >red instead of orange when that P atom is missing; likely due to > >specific models, not that important. > > > I'll check into that. Is a bit strange. Not too much. Some of my models are cut versions of PDB, and lack the 5'-P it seems. Since backbone renderings are connected to P, it is not strange that they get red, for the oxigen. Not nice, but logical. In fact, I should check my files and put back the missing P; it's only that up to now I had not noticed -I don't use nucleic cartoons too often becuase the old rendering (Chime) was not nice; Jmol new one with bases is-. ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
