Bob Hanson wrote: >> There is still the problem of the 5'-terminal portion being colored >> red instead of orange when that P atom is missing; likely due to >> specific models, not that important. >> >> >> > I'll check into that. Is a bit strange. > > Bob >
When the phosphorus is missing, the default is to assign the "lead atom" for that group -- the one defining the trace and the color -- to be the last atom in the set. In this case it is ATOM 30 H5T A 1 6.651 9.928 6.121 1.00 1.43 143D 112 Being hydrogen, its color is white. So that sets the color for the whole group. Using cartoons 0.01 you can see it better. Probably it's good that it does this -- an indication of the 5' end. On models not having hydrogens it is probably red and goes through O5*. If it is not desired, you can just use select nucleic color [xff8000] Bob ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
