Dean, please send me the script. I'd like to fix this. Dean Johnston wrote:
> I’m getting an odd (and hard to reproduce) crash with the Jmol applet > (Firefox or Safari on OS X, version 11.1.48_dev). I try and load an > inline model and sporadically get the error listed below. It seems to > always be in the middle of creating the new bonds (my page creates all > the bonds manually from a connection list) after the molecule loads. > > For some reason I never get the same error under Windows (Firefox or IE). > > If it’s any help, my earlier version of the page that uses the 11.1.22 > applet does not produce the same error. > > Dean Johnston > > --------------------------- > FileManager.openStringInline() > The Resolver thinks Xyz > ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false > 1 model in this collection. Use getProperty "modelInfo" or getProperty > "auxiliaryInfo" to inspect them. > ModelSet: autobonding; use autobond=false to not generate bonds > automatically > data "model molecule" > |12|molecule|C -1.2125 -0.7000 0.0000|C -1.2125 0.7000 0.0000|C 0.0000 > 1.4000 0.0000|C 1.2124 0.7000 0.0000|C 1.2124 -0.7000 0.0000|C 0.0000 > -1.4000 0.0000|H -2.1478 -1.2400 0.0000|H -2.1478 1.2400 0.0000|H > 0.0000 2.4800 0.0000|H 2.1477 1.2400 0.0000|H 2.1477 -1.2400 0.0000|H > 0.0000 -2.4800 0.0000| > 12 bonds deleted > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > Exception in thread "AWT-EventQueue-8" java.lang.NullPointerException > at org.jmol.shape.Sticks.setModelClickability(Unknown Source) > at org.jmol.modelset.ModelSet.setModelVisibility(Unknown Source) > at org.jmol.modelset.ModelManager.setModelVisibility(Unknown Source) > at org.jmol.viewer.Viewer.setModelVisibility(Unknown Source) > at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source) > at org.jmol.applet.Jmol.update(Unknown Source) > at org.jmol.applet.Jmol.update(Unknown Source) > at org.jmol.appletwrapper.AppletWrapper.update(Unknown Source) > at sun.awt.RepaintArea.updateComponent(RepaintArea.java:267) > at sun.awt.RepaintArea.paint(RepaintArea.java:233) > at apple.awt.ComponentModel.handleEvent(ComponentModel.java:251) > at apple.awt.MyCPanel.handleEvent(MyCPanel.java:97) > at java.awt.Component.dispatchEventImpl(Component.java:4097) > at java.awt.Container.dispatchEventImpl(Container.java:2068) > at java.awt.Component.dispatchEvent(Component.java:3869) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:463) > at jep.MySimpleEventQueue.dispatchEvent(MySimpleEventQueue.java:59) > at > java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:269) > at > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176) > at java.awt.EventDispatchThread.run(EventDispatchThread.java:110) > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > 1 new bonds; 0 modified > perspectivedepth = false > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by DB2 Express >Download DB2 Express C - the FREE version of DB2 express and take >control of your XML. No limits. Just data. Click to get it now. >http://sourceforge.net/powerbar/db2/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
