OK, at the URL below (way below), note that the label at the left,
Hsp90-N, is black.
Click the checkbox for labels to turn them off, then click again to
turn them on. The label is pink. I've copied the label script below.
In the console you will see a javascript command
javascript "resetControls('labels')"
this does the following (full function is in 3d/controls_vars.js)
jmolScript("set picking ident;");
top.document.getElementById('center1').checked = true;
if (top.document.getElementById('rock').checked == true)
{
top.document.getElementById('rockspin_off').checked =
true;
}
Here is the label script. The last label has the "color label magenta"
command, which causes the first label to turn pink when the script is
repeated. Note that after every label I have issued color, font, etc
commands, because this was happening to every label. I uncommented
them on that first label so you could see the problem.
# ------fig 1a ------------
select 179:A.CA
label Hsp90-N
set labeloffset 0 -20
#color label black
#font label 20 sans bold
#set labelpointer off
select 243:B.CA
label Cdc37-C
set labeloffset 20 20
color label black
font label 20 sans bold
set labelpointer off
select 109:A.CA
label lid
set labeloffset -10 -10
color label [xf701f7] #magenta
font label 20 sans bold
set labelpointer off
# ------ fig1b -------------
select 295:G.CA
label Hsp90-M
set labeloffset 0 -20
color label black
font label 20 sans bold
set labelpointer off
select 150:H.CA
label Aha1-N
set labeloffset 20 -20
color label black
font label 20 sans bold
set labelpointer off
select 377:G.CA
label catalytic|loop
set labeloffset 0 -50
color label [xf701f7] #magenta
font label 20 sans bold
set labelpointer off
# ------fig 7b ------------
# no labels
# ------fig 7c ------------
select atomno=643 and :Z
label Gly97
set labeloffset 1 0
color label black
font label 14 sans bold
set labelpointer off
select atomno=1287 and :Z
label Thr184
set labeloffset -20 0
#set labelalignment right
set labelpointer on
font label 14 sans bold
color label black
select atomno=622 and :Z
label Asp93
font label 14 sans bold
color label magenta
set labeloffset 1 0
set labelpointer off
# ------end ------------
The default label setting and script call
select none
font label 20 sans bold
color label black
script 3d/labelson.spt
are in the script 3d/1_fig1A_init.spt.
http://moleculesinmotion.com/3Dfigure_test/figure1.htm
Thanks for looking into this.
Frieda
On Feb 13, 2008, at 10:52 PM, Frieda Reichsman wrote:
> Hmmm, maybe I have something else going on that's interfering. I'll
> look at it again...
>
> On Feb 13, 2008, at 4:52 PM, Bob Hanson wrote:
>
>> Frieda,
>>
>> I'm not able to reproduce the problem.
>>
>> Frieda Reichsman wrote:
>>
>>> Nope, that's not what I am saying. At least, I don't think so. I
>>> think
>>> I just wasn't watching the order of commands in my example. Here's
>>> the
>>> real code:
>>>
>>> In the initialization script, I set the default for labels:
>>>
>>> select none
>>> font label 20 sans bold
>>> color label black
>>>
>>>
>>>
>> works
>>
>>> in the label script, first I create a label that should pick up the
>>> defaults, and follow with a label that I want to be different:
>>>
>>> select 179:A.CA
>>> label Hsp90-N
>>> set labeloffset 0 -20
>>>
>>>
>>>
>> works
>>
>>> select 377:G.CA
>>> label catalytic|loop
>>> set labeloffset 0 -50
>>> color label [xf701f7] #magenta
>>> font label 12 sans bold
>>>
>>>
>>>
>> works
>>
>>> Everything works the first time the script is triggered. But if I
>>> send
>>> the label script again (which happens if someone turns off the
>>> labels
>>> and then turns them on again), the label on 179:A.CA is magenta and
>>> 12
>>> point.
>>>
>>>
>>>
>> I'm not seeing that. Please send a history so we can see what exactly
>> was sent.
>> What exactly is in that "label script" you send again?
>>
>> My GUESS is that later, after a LABELS OFF, you are sending the LABEL
>> command without again giving the desired font/offset/color
>> information
>> after. But maybe I'm still missing something.
>>
>> Bob
>>
>>
>>
>>> In each case, I am labeling before I set the color and font.
>>>
>>> The same thing happens with label pointers, etc.
>>>
>>> Frieda
>>>
>>>
>>> On Feb 13, 2008, at 12:20 PM, Bob Hanson wrote:
>>>
>>>
>>>
>>>> OK, this is a bit tricky. It IS the way it is designed to work, but
>>>> that
>>>> is not well described.
>>>> Generally, you can do this:
>>>>
>>>> select atomno=100
>>>> font label 12 sans bold
>>>> color label blue
>>>> label Ala324
>>>>
>>>> And the label will go in as size 12, blue. But, if you have
>>>> defined a
>>>> default font and color and you do the same thing, the "label"
>>>> command
>>>> picks up the defaults instead. So in that case, if you are using
>>>> defaults, you have to change the font and color AFTER the "label"
>>>> command:
>>>>
>>>> select atomno=100
>>>> label Ala324
>>>> font label 12 sans bold
>>>> color label blue
>>>>
>>>>
>>>> I don't know if this is reasonable or not. But that is the way
>>>> Jmol is
>>>> configured. (And always has been, I think.)
>>>>
>>>> Bob
>>>>
>>>>
>>>> Frieda Reichsman wrote:
>>>>
>>>>
>>>>
>>>>> Hi Bob,
>>>>>
>>>>> In Jmol 11.4.RC4a (and RC2, for what it's worth) I am finding that
>>>>> labels are not working properly. Commands that are issued after a
>>>>> specific atom is selected then overrule global label settings.
>>>>>
>>>>> select none # (or select all)
>>>>> font label 20 sans bold
>>>>> color label black
>>>>>
>>>>> select atomno=230
>>>>> label Arg194
>>>>>
>>>>> select atomno=100
>>>>> font label 12 sans bold
>>>>> color label blue
>>>>> label Ala324
>>>>>
>>>>> above works fine, atom 230 label is black and 20 point font. But
>>>>> when
>>>>> it is followed by
>>>>>
>>>>> select atomno=230
>>>>> label Arg194
>>>>>
>>>>> the Arg194 label is blue and in 12 point font. I don't think
>>>>> that's
>>>>> the intended behavior for labels.
>>>>>
>>>>> Frieda
>>>>>
>>>>>
>>>>>
>>>>> //////////////////////////////////////
>>>>>
>>>>> Frieda Reichsman, PhD
>>>>> Molecules in Motion
>>>>> Interactive Molecular Structures
>>>>> http://www.moleculesinmotion.com
>>>>> 413-253-2405
>>>>>
>>>>> //////////////////////////////////////
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -------------------------------------------------------------------------
>>>>> This SF.net email is sponsored by: Microsoft
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>>>>>
>>>>>
>>>>>
>>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>>
>>>>
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>>>>
>>>
>>>
>>> -------------------------------------------------------------------------
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>>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
>> -------------------------------------------------------------------------
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>
>
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