That would be great, thank you.
Frieda
On Feb 14, 2008, at 10:20 AM, Bob Hanson wrote:
> I'll see if I can set it up so that there is a distinction between
>
> select none
>
> and
>
> select somethingNotPresent
>
> in this regard.
>
> Bob
>
>
> Frieda Reichsman wrote:
>
>> Thanks for that neat lesson in detective work, I will be using the
>> history tricks you demonstrate.
>>
>> I use a single labels script throughout a set of figures, thinking
>> that selecting something that's not there would not have a negative
>> effect. (There, I was certainly wrong.) But a few if statements in
>> the
>> script, I imagine, should enable Jmol to avoid those calls that
>> select no atoms.
>>
>> Frieda
>>
>> On Feb 14, 2008, at 7:48 AM, Bob Hanson wrote:
>>
>>
>>
>>> Frieda,
>>>
>>> That's what I needed. It's a sneaky script bug. When you see the
>>> default
>>> change like that, it means you had the equivalent of a
>>>
>>> select none
>>>
>>> which most likely means you selected something that does not
>>> exist. So
>>> it ACTS like a "select none"
>>>
>>> In the console on that page, I typed:
>>>
>>> set history 0;set history 2000;set historyLevel 3
>>>
>>> That (a) resets the history, (b) allows a long history listing in
>>> case I
>>> need it, and (c) sets Jmol to record history from called scripts
>>> of at
>>> least two levels deep, not just the command line. Frieda, remember
>>> that
>>> one -- you will use it again!
>>>
>>> Here's what I got for that history:
>>>
>>> # ------fig 1a ------------
>>> select 179:A.CA
>>> label Hsp90-N
>>> set labeloffset 0 -20
>>> #color label black
>>> #font label 20 sans bold
>>> #set labelpointer off
>>>
>>> #....lots more...
>>>
>>> select atomno=622 and :Z
>>> label Asp93
>>> font label 14 sans bold
>>> color label magenta
>>> set labeloffset 1 0
>>> set labelpointer off
>>>
>>>
>>> That's a default setting, because when I type
>>>
>>> select atomno=622 and :Z
>>>
>>> I get
>>>
>>> 0 atoms selected
>>>
>>> And from
>>>
>>> print {atomno=622}.ident
>>>
>>> I see
>>>
>>> [ARG]78:A.C
>>>
>>> which of course is not chain :Z
>>>
>>> In connection with that, the Hsp90-N label has a default color and
>>> font,
>>> so when you send that script again, it picks up the default
>>> settings,
>>> which are now set to magenta 14.
>>>
>>> Mystery solved!
>>>
>>> Bob
>>>
>>>
>>>
>>>> http://moleculesinmotion.com/3Dfigure_test/figure1.htm
>>>>
>>>>
>>>>
>>>>
>>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>>
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>>>
>>
>>
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>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> -------------------------------------------------------------------------
> This SF.net email is sponsored by: Microsoft
> Defy all challenges. Microsoft(R) Visual Studio 2008.
> http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
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