On Mon, Aug 8, 2011 at 5:12 PM, Martin Hediger <ma....@bluewin.ch> wrote:
> Thank you for the feedback. > indeed it seems to work. Just one question, is it possible to display a > structure in PDB format and a structure from a PQR formatted file at the > same time? sure. Just load xxxxx.pqr # in frame 1.1 load append yyyy.pdb # in frame 2.1 frame * and do anything with them you want. Question: Is it important to you that Jmol not change PQR radii that are < 0.9 to 1.0? If so, we could set up a filter for that. > The background is, the PDB file defines a protein structure, > and with the PQR file, the charge distribution throughout the protein is > defined. Now I would like to display spheres of, say, 3x the VdW radius > to illustrate the charges, unfortunately, the data from the PQR file is > displayed only by "crosses" which are smaller than the ball-and-stick > balls from the PDB file. How can I 1) show the spheres and 2) increase > their size? > spacefill 300% Are you OK with the hydrogen VDW being adjusted so as to not be 0? (Perhaps > > Kind regards and thank you for your efforts. > Martin > > > ------------------------------------------------------------------------------ > uberSVN's rich system and user administration capabilities and model > configuration take the hassle out of deploying and managing Subversion and > the tools developers use with it. Learn more about uberSVN and get a free > download at: http://p.sf.net/sfu/wandisco-dev2dev > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------ uberSVN's rich system and user administration capabilities and model configuration take the hassle out of deploying and managing Subversion and the tools developers use with it. Learn more about uberSVN and get a free download at: http://p.sf.net/sfu/wandisco-dev2dev
_______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
