Dear Robert
Thanks for the answer.
load xxxxx.pqr # in frame 1.1
load append yyyy.pdb # in frame 2.1
frame *
Question: Is it important to you that Jmol not change PQR radii that
are < 0.9 to 1.0? If so, we could set up a filter for that.
No, it does not matter to me. All I would like is to have the charges be
nicely visible, i.e. at least 4-5 times larger in radius than a carbon.
The background is, the PDB file defines a protein structure,
and with the PQR file, the charge distribution throughout the
protein is
defined. Now I would like to display spheres of, say, 3x the VdW
radius
to illustrate the charges, unfortunately, the data from the PQR
file is
displayed only by "crosses" which are smaller than the ball-and-stick
balls from the PDB file. How can I 1) show the spheres and 2) increase
their size?
spacefill 300%
Are you OK with the hydrogen VDW being adjusted so as to not be 0?
(Perhaps
Thats alright as well.
It seems as if it is not possible to increase above 200%. Could that be
true?
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