In Jmol 13.1.16_a, "set cartoonladder true/false" is not recognized. Bug?
On Jun 17, 2013, at 10:00 AM, Robert Hanson wrote:
> The only change in Jmol.js since 2011 was
>
> // bh 5/2013 -- fix for master checkbox click not actuating checkboxes
>
>
>
>
>
> On Mon, Jun 17, 2013 at 8:28 AM, Frieda Reichsman <[email protected]> wrote:
> OK, thanks Bob.
>
> On Jun 17, 2013, at 9:15 AM, Robert Hanson wrote:
>
>> Oh, OK. I see that Jmol.js wasn't going into the zip file. See
>> http://chemapps.stolaf.edu/jmol/Jmol.js
>>
>>
>>
>>
>> On Sun, Jun 16, 2013 at 9:58 PM, Frieda Reichsman <[email protected]> wrote:
>> I'm not trying to use JSmol. I will get there at some point but currently I
>> need to stick with Jmol. So-- does that mean there *is* a Jmol.js file I
>> should be seeing somewhere?
>>
>> On Jun 16, 2013, at 9:30 PM, Robert Hanson wrote:
>>
>>> Frieda, I think you are downloading the Jmol files. You want
>>>
>>> http://chemapps.stolaf.edu/jmol/jsmol.zip
>>>
>>>
>>>
>>>
>>> On Sun, Jun 16, 2013 at 7:37 PM, Frieda Reichsman <[email protected]> wrote:
>>> I'd be happy to try this out and report back, but neither of those files
>>> are included in the downloaded folders, either. Where does one get them?
>>>
>>>
>>> On Jun 16, 2013, at 7:01 PM, Robert Hanson wrote:
>>>
>>>> Hi, Frieda. How are you doing?
>>>>
>>>> JSmol does not use Jmol.js. So that's right, you won't find it there. I
>>>> would appreciate your trying this combo instead:
>>>>
>>>> <script type="text/javascript" src="JSmol.min.js"></script>
>>>> <script type="text/javascript" src="Jmol2.js"></script>
>>>>
>>>> Let me know how that goes. For the most part, that will make older pages
>>>> work as though they had Jmol.js. But there will be a few issues I'm sure
>>>> with more complicated pages. Read the top comment in Jmol2.js.
>>>>
>>>>
>>>> Bob
>>>>
>>>>
>>>>
>>>>
>>>> On Sun, Jun 16, 2013 at 5:14 PM, Frieda Reichsman <[email protected]>
>>>> wrote:
>>>> Thanks Bob, I have downloaded 13.1.15, and 13.1.16_a, but I do not see the
>>>> Jmol.js file in these releases. Where do I find the Jmol.js version that
>>>> would go with these downloads?
>>>>
>>>> On Jun 10, 2013, at 7:53 AM, Robert Hanson wrote:
>>>>
>>>>> Frieda, all new features go into Jmol 13.1 only, not Jmol 13.0. Sorry for
>>>>> not making that clear.
>>>>>
>>>>> Also, note that there are already some bug fixes for PyMOL PSE file
>>>>> reading particularly. See http://chemapps.stolaf.edu/jmol/Jmol-13.zip for
>>>>> the latest.
>>>>>
>>>>>
>>>>> On Sun, Jun 9, 2013 at 2:31 PM, Frieda Reichsman <[email protected]>
>>>>> wrote:
>>>>>
>>>>> On Apr 29, 2013, at 2:15 PM, Robert Hanson wrote:
>>>>> >
>>>>> > new feature: set cartoonLadder -- default TRUE (standard Jmol rendering
>>>>> > of nucleic acids), but when FALSE no bases, just "ladders", like PyMOL
>>>>>
>>>>> Hi Bob,
>>>>>
>>>>> I'm using the Jmol application, version 13.0.16, and finding that
>>>>> cartoonLadder is not recognized as a "set" parameter. Also, I saved a
>>>>> state script and it does not appear in the list of set parameters (not
>>>>> sure every one is supposed to be listed but it looks like it).
>>>>>
>>>>> And thanks for implementing this, btw-- it'll be great to have it
>>>>> available in Jmol.
>>>>>
>>>>> Best,
>>>>> Frieda
>>>>>
>>>>>
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>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
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>>>>
>>>>
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>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
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>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
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>>> This SF.net email is sponsored by Windows:
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>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> This SF.net email is sponsored by Windows:
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>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> This SF.net email is sponsored by Windows:
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