OK, I verified that with the S, it works in the Jmol app, version 13.1.16_a.
However I am having a weird problem with the applet. I uploaded the applet
files from 13.1.16_a, but when I load the web page, the applet chokes on' set
cartoonladders false', AND when I select "About..." from the menu, Jmol reports
its version as Jmol 12.1.16.
I have deleted the files, re-downloaded jmol from sourceforge, and I still get
the same issue. (And the page is also displaying the French version of Jmol,
bizarrely enough).
http://moleculesinmotion.com/BJ-2013-0316/figure4.htm
Has anyone else deployed the unsigned applet from 13.1.16_a?
Is it possible that in the download for 13.1.16_A, an old applet got packed up
there?
Frieda
On Jun 18, 2013, at 9:31 AM, Robert Hanson wrote:
> sorry, it's
>
> set cartoonLadderS
>
> I probably forgot the S there.
>
>
> On Tue, Jun 18, 2013 at 6:22 AM, Frieda Reichsman <[email protected]> wrote:
> In Jmol 13.1.16_a, "set cartoonladder true/false" is not recognized. Bug?
>
>
> On Jun 17, 2013, at 10:00 AM, Robert Hanson wrote:
>
>> The only change in Jmol.js since 2011 was
>>
>> // bh 5/2013 -- fix for master checkbox click not actuating checkboxes
>>
>>
>>
>>
>>
>> On Mon, Jun 17, 2013 at 8:28 AM, Frieda Reichsman <[email protected]> wrote:
>> OK, thanks Bob.
>>
>> On Jun 17, 2013, at 9:15 AM, Robert Hanson wrote:
>>
>>> Oh, OK. I see that Jmol.js wasn't going into the zip file. See
>>> http://chemapps.stolaf.edu/jmol/Jmol.js
>>>
>>>
>>>
>>>
>>> On Sun, Jun 16, 2013 at 9:58 PM, Frieda Reichsman <[email protected]> wrote:
>>> I'm not trying to use JSmol. I will get there at some point but currently
>>> I need to stick with Jmol. So-- does that mean there *is* a Jmol.js file I
>>> should be seeing somewhere?
>>>
>>> On Jun 16, 2013, at 9:30 PM, Robert Hanson wrote:
>>>
>>>> Frieda, I think you are downloading the Jmol files. You want
>>>>
>>>> http://chemapps.stolaf.edu/jmol/jsmol.zip
>>>>
>>>>
>>>>
>>>>
>>>> On Sun, Jun 16, 2013 at 7:37 PM, Frieda Reichsman <[email protected]>
>>>> wrote:
>>>> I'd be happy to try this out and report back, but neither of those files
>>>> are included in the downloaded folders, either. Where does one get them?
>>>>
>>>>
>>>> On Jun 16, 2013, at 7:01 PM, Robert Hanson wrote:
>>>>
>>>>> Hi, Frieda. How are you doing?
>>>>>
>>>>> JSmol does not use Jmol.js. So that's right, you won't find it there. I
>>>>> would appreciate your trying this combo instead:
>>>>>
>>>>> <script type="text/javascript" src="JSmol.min.js"></script>
>>>>> <script type="text/javascript" src="Jmol2.js"></script>
>>>>>
>>>>> Let me know how that goes. For the most part, that will make older pages
>>>>> work as though they had Jmol.js. But there will be a few issues I'm sure
>>>>> with more complicated pages. Read the top comment in Jmol2.js.
>>>>>
>>>>>
>>>>> Bob
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Sun, Jun 16, 2013 at 5:14 PM, Frieda Reichsman <[email protected]>
>>>>> wrote:
>>>>> Thanks Bob, I have downloaded 13.1.15, and 13.1.16_a, but I do not see
>>>>> the Jmol.js file in these releases. Where do I find the Jmol.js version
>>>>> that would go with these downloads?
>>>>>
>>>>> On Jun 10, 2013, at 7:53 AM, Robert Hanson wrote:
>>>>>
>>>>>> Frieda, all new features go into Jmol 13.1 only, not Jmol 13.0. Sorry
>>>>>> for not making that clear.
>>>>>>
>>>>>> Also, note that there are already some bug fixes for PyMOL PSE file
>>>>>> reading particularly. See http://chemapps.stolaf.edu/jmol/Jmol-13.zip
>>>>>> for the latest.
>>>>>>
>>>>>>
>>>>>> On Sun, Jun 9, 2013 at 2:31 PM, Frieda Reichsman <[email protected]>
>>>>>> wrote:
>>>>>>
>>>>>> On Apr 29, 2013, at 2:15 PM, Robert Hanson wrote:
>>>>>> >
>>>>>> > new feature: set cartoonLadder -- default TRUE (standard Jmol
>>>>>> > rendering of nucleic acids), but when FALSE no bases, just "ladders",
>>>>>> > like PyMOL
>>>>>>
>>>>>> Hi Bob,
>>>>>>
>>>>>> I'm using the Jmol application, version 13.0.16, and finding that
>>>>>> cartoonLadder is not recognized as a "set" parameter. Also, I saved a
>>>>>> state script and it does not appear in the list of set parameters (not
>>>>>> sure every one is supposed to be listed but it looks like it).
>>>>>>
>>>>>> And thanks for implementing this, btw-- it'll be great to have it
>>>>>> available in Jmol.
>>>>>>
>>>>>> Best,
>>>>>> Frieda
>>>>>>
>>>>>>
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>>>>>>
>>>>>>
>>>>>> --
>>>>>> Robert M. Hanson
>>>>>> Larson-Anderson Professor of Chemistry
>>>>>> St. Olaf College
>>>>>> Northfield, MN
>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>
>>>>>>
>>>>>> If nature does not answer first what we want,
>>>>>> it is better to take what answer we get.
>>>>>>
>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> How ServiceNow helps IT people transform IT departments:
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>>>>>
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>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> This SF.net email is sponsored by Windows:
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>>>>
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>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
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>>>> This SF.net email is sponsored by Windows:
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>>>
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>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
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>>> This SF.net email is sponsored by Windows:
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>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> This SF.net email is sponsored by Windows:
>>
>> Build for Windows Store.
>>
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>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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