Thanks for bringing this up, Bob. I'm actually very eager to switch to JSmol,
but I felt I didn't have time to figure out how to use JSmol for my latest
figure, which involves 5 applets and uses the sync command. I just wasn't 100%
sure that everything I needed would be supported, and also I didn't want to
mess with my template page for figures. Also, in general, I was not sure
whether JSmol would spin large proteins smoothly.
However I just went to your test page to check it out and it seems like the
rotation on 1hbo (hemoglobin) is pretty good.
BTW, the mep isosurface command on that page locks up the page and Firefox gave
me the following error message:
A script on this page may be busy, or it may have stopped responding. You can
stop the script now, or you can continue to see if the script will complete.
Script: http://chemapps.stolaf.edu/jmol/jsmol/j2s/core/core.z.js:650
I have another figure coming up, possibly with multiple applets. I'll give
JSmol a try.
Any links to pages with tips about how to switch over would be very appreciated.
Thanks again for your amazing work, Bob.
On Jun 20, 2013, at 11:32 AM, Robert Hanson wrote:
> I have uploaded a new http://chemapps.stolaf.edu/jmol/jsmol.zip
>
> Frieda, I was thinking. You said, "I'm not using JavaScript." And that is
> fine, but the real reason to use JSmol is not necessarily because you want an
> iPad-viewable model. The reason is that we have stopped developing with
> Jmol.js, and the JSmol "JavaScript Object" option is much better, even for
> Java, just in terms of how it fits into web pages and how you put together
> applets on the page. Not that you can't keep using Jmol.js....
>
> Bob
>
>
>
>
> On Thu, Jun 20, 2013 at 10:28 AM, Frieda Reichsman <[email protected]> wrote:
> Thanks Angel, I had cleared browser cache and updated Java as well as
> restarting my machine. I had no idea that the Java cache was resistant to all
> of that... in fact, clearing the Java cache and browser cache again were
> necessary, and finally I can see my page in action. Whew!
>
>
> On Jun 20, 2013, at 11:14 AM, Angel Herráez wrote:
>
> > Dear Frieda
> >
> > My first guess is that your browser's JVM is caching the old applet.
> > Try cleaning the Java cache.
> >
> > I just accessed your page
> > http://moleculesinmotion.com/BJ-2013-0316/figure4.htm
> > and the popup says 13.1.16_a and the interface is in Spanish (as it
> > should for me)
> >
> > WinXP, Firefox 21.0
> > Oracle Java 1.7.0_21
> >
> >
> >
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>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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