I'm sorry but I'm still not getting it. I presume from the context
that the XXXX means the PDB ID code of the model I want. In my case
8tln, but of course there are many to chose from.
My link is:
<a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap sigma
1 within 7.0 {26:E} color blue =\"8tln\" mesh nofill")'>Load Map from
EDS</a>
I had a bit of struggle to get the quotes right, but I think my code has
the three levels of quotes correct. (If I have the double quotes on the
outer level I see error messages that relate to confused quotation.)
The problem is that I don't get a map.
This link works fine.
<a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap sigma
1 within 7.0 {26:E} color blue data/2fo-fc_6.map mesh nofill")'>Load Map
from Disk</a>
I'm running Firefox on a Windows 7 computer with the JavaScript
debugger, but I'm not getting any errors or warnings reported.
I don't really know how to proceed from this point.
Dale Tronrud
On 03/12/2014 02:09 PM, Robert Hanson wrote:
> Must be a documentation error -- you need quotes around the file name in
> an isosurface command. The load, script, and write commands are special
> in that regard, but the isosurface command is so complicated it needs
> quotes.
>
>
> On Wed, Mar 12, 2014 at 1:15 PM, Dale Tronrud <de...@daletronrud.com
> <mailto:de...@daletronrud.com>> wrote:
>
> Hi,
>
> I'm a newbie to the jmol world and have been very impressed by
> what I've seen so far. I'm starting with a little web app to display
> a bit of a protein along with its electron density map.
>
> I'm using version 14.0.11. The documentation web page at
>
> http://chemapps.stolaf.edu/jmol/docs/?ver=14.0#isosurface
>
> tells me that I should be able to load a map from the EDS with
>
> isosurface ID DenMap within 7.0 {26:E} color blue =8tln mesh nofill
>
> but this command doesn't give me a map. I think it is causing the
> entire script to bomb but I haven't figured out if or where an
> error message is sent.
>
> If I download the map myself from the EDS and load it with
>
> isosurface ID DenMap within 7.0 {26:E} color blue data/8tln.ccp4.gz mesh
> nofill
>
> I get a density map just fine.
>
> How is isosurface =XXXX supposed to work?
>
> Thanks,
> Dale Tronrud
>
>
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> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
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