I had tried that. That gives me the debugger message SyntaxError: identifier starts immediately after numeric literal
The sources I've seen on the web say that HTML sees the single quoted string and ignores all of the double quotes inside. JavaScript sees the double quoted string and it deals with the \" as a literal quote. I do know that putting the double quotes on the outside prevents the \" from working and I get a syntax error. The order of quotes I have doesn't give a syntax error, but then again it doesn't work even though the syntax is correct. When the script does other sorts of GET's, like GET http://chemapps.stolaf.edu/jmol/JmolTracker.htm, it is logged by the debugger. My isosurface command doesn't even seem to be getting to the GET. Dale Tronrud On 03/14/2014 03:09 PM, Robert Hanson wrote: > In HTML the escape character is ". You can't use \" in tags. > > > On Fri, Mar 14, 2014 at 4:49 PM, Dale Tronrud > <de...@daletronrud.com <mailto:de...@daletronrud.com>> wrote: > > > I'm sorry but I'm still not getting it. I presume from the > context that the XXXX means the PDB ID code of the model I want. > In my case 8tln, but of course there are many to chose from. > > My link is: > > <a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap > sigma 1 within 7.0 {26:E} color blue =\"8tln\" mesh nofill")'>Load > Map from EDS</a> > > I had a bit of struggle to get the quotes right, but I think my > code has the three levels of quotes correct. (If I have the double > quotes on the outer level I see error messages that relate to > confused quotation.) The problem is that I don't get a map. > > This link works fine. > > <a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap > sigma 1 within 7.0 {26:E} color blue data/2fo-fc_6.map mesh > nofill")'>Load Map from Disk</a> > > I'm running Firefox on a Windows 7 computer with the JavaScript > debugger, but I'm not getting any errors or warnings reported. > > I don't really know how to proceed from this point. > > Dale Tronrud > > On 03/12/2014 02:09 PM, Robert Hanson wrote: >> Must be a documentation error -- you need quotes around the file > name in >> an isosurface command. The load, script, and write commands are > special >> in that regard, but the isosurface command is so complicated it >> needs quotes. >> >> >> On Wed, Mar 12, 2014 at 1:15 PM, Dale Tronrud > <de...@daletronrud.com <mailto:de...@daletronrud.com> >> <mailto:de...@daletronrud.com <mailto:de...@daletronrud.com>>> >> wrote: >> >> Hi, >> >> I'm a newbie to the jmol world and have been very impressed by >> what I've seen so far. I'm starting with a little web app to > display >> a bit of a protein along with its electron density map. >> >> I'm using version 14.0.11. The documentation web page at >> >> http://chemapps.stolaf.edu/jmol/docs/?ver=14.0#isosurface >> >> tells me that I should be able to load a map from the EDS with >> >> isosurface ID DenMap within 7.0 {26:E} color blue =8tln mesh > nofill >> >> but this command doesn't give me a map. I think it is causing >> the entire script to bomb but I haven't figured out if or where >> an error message is sent. >> >> If I download the map myself from the EDS and load it with >> >> isosurface ID DenMap within 7.0 {26:E} color blue > data/8tln.ccp4.gz mesh >> nofill >> >> I get a density map just fine. >> >> How is isosurface =XXXX supposed to work? >> >> Thanks, Dale Tronrud >> >> > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book >> "Graph Databases" is the definitive new guide to graph > databases and >> their applications. Written by three acclaimed leaders in the >> field, this first edition is now available. Download your free >> book > today! >> http://p.sf.net/sfu/13534_NeoTech >> _______________________________________________ Jmol-users >> mailing list Jmol-users@lists.sourceforge.net > <mailto:Jmol-users@lists.sourceforge.net> >> <mailto:Jmol-users@lists.sourceforge.net > <mailto:Jmol-users@lists.sourceforge.net>> >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. >> Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, it is better to >> take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> >> >> > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book >> "Graph Databases" is the definitive new guide to graph databases > and their >> applications. Written by three acclaimed leaders in the field, >> this first edition is now available. Download your free book >> today! http://p.sf.net/sfu/13534_NeoTech >> >> >> >> _______________________________________________ Jmol-users >> mailing list Jmol-users@lists.sourceforge.net > <mailto:Jmol-users@lists.sourceforge.net> >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases > and their applications. Written by three acclaimed leaders in the > field, this first edition is now available. Download your free book > today! http://p.sf.net/sfu/13534_NeoTech > _______________________________________________ Jmol-users mailing > list Jmol-users@lists.sourceforge.net > <mailto:Jmol-users@lists.sourceforge.net> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry St. Olaf > College Northfield, MN http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, it is better to take > what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------------ > > Learn Graph Databases - Download FREE O'Reilly Book > "Graph Databases" is the definitive new guide to graph databases > and their applications. Written by three acclaimed leaders in the > field, this first edition is now available. Download your free book > today! http://p.sf.net/sfu/13534_NeoTech > > > > _______________________________________________ Jmol-users mailing > list Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. Written by three acclaimed leaders in the field, this first edition is now available. Download your free book today! http://p.sf.net/sfu/13534_NeoTech _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
