In HTML the escape character is ". You can't use \" in tags.
On Fri, Mar 14, 2014 at 4:49 PM, Dale Tronrud <de...@daletronrud.com> wrote:
>
> I'm sorry but I'm still not getting it. I presume from the context
> that the XXXX means the PDB ID code of the model I want. In my case
> 8tln, but of course there are many to chose from.
>
> My link is:
>
> <a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap sigma
> 1 within 7.0 {26:E} color blue =\"8tln\" mesh nofill")'>Load Map from
> EDS</a>
>
> I had a bit of struggle to get the quotes right, but I think my code has
> the three levels of quotes correct. (If I have the double quotes on the
> outer level I see error messages that relate to confused quotation.)
> The problem is that I don't get a map.
>
> This link works fine.
>
> <a href='javascript:Jmol.script(jmolApplet0,"isosurface ID DenMap sigma
> 1 within 7.0 {26:E} color blue data/2fo-fc_6.map mesh nofill")'>Load Map
> from Disk</a>
>
> I'm running Firefox on a Windows 7 computer with the JavaScript
> debugger, but I'm not getting any errors or warnings reported.
>
> I don't really know how to proceed from this point.
>
> Dale Tronrud
>
> On 03/12/2014 02:09 PM, Robert Hanson wrote:
> > Must be a documentation error -- you need quotes around the file name in
> > an isosurface command. The load, script, and write commands are special
> > in that regard, but the isosurface command is so complicated it needs
> > quotes.
> >
> >
> > On Wed, Mar 12, 2014 at 1:15 PM, Dale Tronrud <de...@daletronrud.com
> > <mailto:de...@daletronrud.com>> wrote:
> >
> > Hi,
> >
> > I'm a newbie to the jmol world and have been very impressed by
> > what I've seen so far. I'm starting with a little web app to display
> > a bit of a protein along with its electron density map.
> >
> > I'm using version 14.0.11. The documentation web page at
> >
> > http://chemapps.stolaf.edu/jmol/docs/?ver=14.0#isosurface
> >
> > tells me that I should be able to load a map from the EDS with
> >
> > isosurface ID DenMap within 7.0 {26:E} color blue =8tln mesh nofill
> >
> > but this command doesn't give me a map. I think it is causing the
> > entire script to bomb but I haven't figured out if or where an
> > error message is sent.
> >
> > If I download the map myself from the EDS and load it with
> >
> > isosurface ID DenMap within 7.0 {26:E} color blue data/8tln.ccp4.gz
> mesh
> > nofill
> >
> > I get a density map just fine.
> >
> > How is isosurface =XXXX supposed to work?
> >
> > Thanks,
> > Dale Tronrud
> >
> >
> ------------------------------------------------------------------------------
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> >
> >
> > --
> > Robert M. Hanson
> > Larson-Anderson Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> >
> >
> >
> ------------------------------------------------------------------------------
> > Learn Graph Databases - Download FREE O'Reilly Book
> > "Graph Databases" is the definitive new guide to graph databases and
> their
> > applications. Written by three acclaimed leaders in the field,
> > this first edition is now available. Download your free book today!
> > http://p.sf.net/sfu/13534_NeoTech
> >
> >
> >
> > _______________________________________________
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> >
>
>
> ------------------------------------------------------------------------------
> Learn Graph Databases - Download FREE O'Reilly Book
> "Graph Databases" is the definitive new guide to graph databases and their
> applications. Written by three acclaimed leaders in the field,
> this first edition is now available. Download your free book today!
> http://p.sf.net/sfu/13534_NeoTech
> _______________________________________________
> Jmol-users mailing list
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>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Learn Graph Databases - Download FREE O'Reilly Book
"Graph Databases" is the definitive new guide to graph databases and their
applications. Written by three acclaimed leaders in the field,
this first edition is now available. Download your free book today!
http://p.sf.net/sfu/13534_NeoTech
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