Dear Rolf, i forgot to mention, the viewer is responsive, it loads JAVA
based viewer if JAVA is installed and enabled, otherwise it switches to
HTML5 WEBGL mode. Did you use the viewer using JAVA engine or HTML5
rendering engine !!
On 20 June 2014 20:49, Ravi Raja Merugu <raviraja.mer...@gmail.com> wrote:
> Thanks you very much Rolf, for the feedback in detailed,
> 1. Actually its taking much time to render in HTML5/WEBGL mode because the
> viewer takes whole space of the browser, more like a full screen mode, so
> HTML5 version of the viewer is pretty slow in rending the whole
> screen(wider your screen slow response it is) , but i saw JAVA mode is
> working with good repsonse,
> 2. Thanks for pointing out the interactiveness, I will add a response
> text when a button is clicked (like loading in Jena 3D )
> 3. I will remove the ON/OFF/ONLY options, you are write they definitely
> confuse the beginners
> 4. I will consider your suggestion regarding simplifying the popup menu
> too.
>
> To overcome the #1 problem, Im thinking to reduce the screen size to
>
> Please take a look at the viewer's performance in JAVA mode, this demo is
> done on a Full HD screen, so the viewer size is around 1900*1280 pixels ,
> yet the rendering is pretty neat and fast (JAVA mode)
> https://www.youtube.com/watch?v=D4nynvSDBn8&feature=youtu.be
>
>
> Best,
> Ravi
>
>
> On 20 June 2014 19:34, Rolf Huehne <rhue...@fli-leibniz.de> wrote:
>
>> On 06/18/2014 01:23 PM, Ravi Raja Merugu wrote:
>> > Dear Rolf and jaime,
>> >
>> > I talked to my web hosting providers and they say currently my website
>> is
>> > not accessible for few of international countries. They might fix this
>> in
>> > few hrs. I will update when its done,
>> >
>> Ravi, the website is now accessible for me (from Germany), although it
>> is performing very slow (Firefox 26.0, OpenSuse 12.2).
>> The first page load took about a minute and even a reload took more than
>> 30 seconds. Loading '1deh' as an example structure from the PDB took
>> also about 35 seconds. So total time until a structure was loaded was
>> about 60 to 90 seconds.
>> For comparison: loading the same entry with our Jena3D viewer
>> (
>> http://jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1deh&APPLET=html5
>> )
>> took about 10 seconds or 5 seconds as a reload.
>> Is the Jena3D viewer also much slower if you try it, indicating that
>> there might be a bottleneck in data transfer rate?
>>
>> Applying functions also was quite slow:
>> a) Presets->Protein1 ~7 sec
>> b) Presets->Protein2 ~60 sec
>> c) Presets->Protein3 ~7 sec
>>
>> Rendering changes in the Jena3D viewer are applied almost
>> instantaneously. So it is not JSmol speed in general that causes this.
>> Maybe the server is contacted before issuing any of these commands?
>>
>> I tried to find out which JSmol version is used, but the popup menu
>> wasn't available. Intentionally, I would guess. In this case it would be
>> nice to add the JSmol version info to the "About viewer" info.
>>
>> I noticed some unusual features of the pulldown menus:
>> 1) The menu stays open while commands are issued already.
>> 2) In the 'Representation' menu there are multiple options selectable
>> within a single row (on, off, only).
>>
>> Number 1) is problematic because the user doesn't have any feedback that
>> his choice was accepted and the program is doing something. This often
>> results in a second or third click, making things worse.
>> Currently this behavior might be especially disturbing because of the
>> long time until an action is finished and because apparently many
>> features aren't functional yet. But even without this I am not sure if
>> it is really a good idea.
>>
>> Since the application interface seems to be targeted at beginners,
>> apparently trying to reduce the complexity of the JSmol popup menu,
>> number 2) might also not be a very good idea. I fear this will be rather
>> confusing than helpful. Although it helps to save space or a secondary
>> menu level.
>>
>> Regards,
>> Rolf
>>
>> --
>>
>> Rolf Huehne
>> Postdoc
>>
>> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
>> Beutenbergstrasse 11
>> 07745 Jena, Germany
>>
>> Phone: +49 3641 65 6205
>> Fax: +49 3641 65 6210
>> E-Mail: rhue...@fli-leibniz.de
>> Website: http://www.fli-leibniz.de
>>
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>>
>>
>> ------------------------------------------------------------------------------
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>
>
>
> --
> Ravi Raja T. Merugu
> Molecular Modeller & Web Developer
> http://www.rsquarelabs.com
>
>
--
Ravi Raja T. Merugu
Molecular Modeller & Web Developer
http://www.rsquarelabs.com
------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
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