On 03/16/2015 01:26 PM, seven32 wrote:
> Hi All,
>
> I am developing a webpage that use Jmol.
> In this page user will be able to open PDB molecule and navigate through a
> list of residues in a separate table.
> I would like to add a functionality that allows user to see a particular
> residue which he selects it in a table. For that reason, I would like to
> rotate a protein in Jmol to show user a residue that he selected in a
> table, i.e. to rotate protein in such a way that particular residue would
> be in a center of a window at the front side of the protein.
>
Maybe the 'zoomto' command is already sufficent for this purpose.
It doesn't include a rotation but it can center and zoom in to a
specified set of atoms in a smooth motion.
Examples:
zoomto {selected} 0
zoomto {resno=3} 0
Please look at the Jmol scripting documentation for the details:
http://jena3d.fli-leibniz.de/doc/jmol_scripting/index.htm?ver=14.2#zoomto
You can see an implementation for a similar purpose in our 'Jena3D Viewer':
1) Load page
jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1a9v&VIEW=variant&APPLET=html5
2) Activate the checkbox 'auto zoom/center' near the top
3) Use the '>' and '<' buttons in the 'SAPs(SNPs)/Variants' section
to navigate through all SNP residues or choose one from the pulldown menu.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
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