Thank you to Rolf, Angel and Richard for answers!
I will certainly use "zoomto" command.
But just for my education - is there any way to get "current" coordinates
of particular atom, which theoretically makes possible (because we know
coordinates of the center) to calculate desired rotation?
2015-03-16 17:55 GMT+04:00 Rolf Huehne <[email protected]>:
> On 03/16/2015 01:26 PM, seven32 wrote:
> > Hi All,
> >
> > I am developing a webpage that use Jmol.
> > In this page user will be able to open PDB molecule and navigate through
> a
> > list of residues in a separate table.
> > I would like to add a functionality that allows user to see a particular
> > residue which he selects it in a table. For that reason, I would like to
> > rotate a protein in Jmol to show user a residue that he selected in a
> > table, i.e. to rotate protein in such a way that particular residue would
> > be in a center of a window at the front side of the protein.
> >
> Maybe the 'zoomto' command is already sufficent for this purpose.
> It doesn't include a rotation but it can center and zoom in to a
> specified set of atoms in a smooth motion.
>
> Examples:
> zoomto {selected} 0
> zoomto {resno=3} 0
>
> Please look at the Jmol scripting documentation for the details:
> http://jena3d.fli-leibniz.de/doc/jmol_scripting/index.htm?ver=14.2#zoomto
>
> You can see an implementation for a similar purpose in our 'Jena3D Viewer':
>
> 1) Load page
>
> jenalib.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1a9v&VIEW=variant&APPLET=html5
> 2) Activate the checkbox 'auto zoom/center' near the top
> 3) Use the '>' and '<' buttons in the 'SAPs(SNPs)/Variants' section
> to navigate through all SNP residues or choose one from the pulldown menu.
>
> Regards,
> Rolf
> --
>
> Rolf Huehne
> Postdoc
>
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