Hi Mathew, I have reviewed the implementation and I dont see any rigid hard-coded names. Its probably not the case. what i can imagine going wrong could potentially be your column names in table incorrectly named in XML's attribute's key (field). I can have a look at your XMLs again if you please send me the latest ones which work.
Many thanks for your patience. Cheers syed On Tue, 2007-07-10 at 08:33 +0100, Arek Kasprzyk wrote: > On 10 Jul 2007, at 04:39, Matthew Hobbs wrote: > > > Hi Syed, > > > > Syed Haider wrote: > >> On Mon, 2007-07-09 at 09:11 +0100, Syed Haider wrote: > >>> With reference to both the threads, one for DAS 'dasRegionFeature' > >>> and > >>> the other one for installation, I do not know how can you query DAS > >>> server if you are getting problems during install. for > >>> dasRegionFeature, > >>> you probably have the latest up to date code and secondarily if you > >>> are > >>> having install level problems, the rest should not work anyways. > > > > > > That is a fair enough comment! However my Windows installation works > > in most respects and in particular DAS works for dasGene-type > > importable/exportable pairs which made me expect that dasRegionFeature > > type DAS should work too... and, as I just realised, it does, if I > > rename my Attributes from 'chrStart' and chrEnd' to 'start' and 'end'. > > I wasn't expecting theinternal names of attributes in the Exportable > > to have to be literally 'start', 'end', 'orientation'. > > > > You are right, there should not be a requirement for any rigid naming > of attributes or filters. > Let us check it again > a. > > > > Thanks again for your efforts, > > > > > > Matthew > > > > > > > > -- > > Matthew Hobbs Research Fellow in Bioinformatics > > Faculty of Veterinary Science > > Building B19, University of Sydney, NSW 2006, Australia > > Phone: +61 2 9351 3154 Fax: +61 2 93513957 > > > > > ------------------------------------------------------------------------ > ------- > Arek Kasprzyk > EMBL-European Bioinformatics Institute. > Wellcome Trust Genome Campus, Hinxton, > Cambridge CB10 1SD, UK. > Tel: +44-(0)1223-494606 > Fax: +44-(0)1223-494468 > ------------------------------------------------------------------------ > ------- > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
