Hi Joachim, >From MartEditor, could you do 'File' => 'Save All' and send me all the xml >files to me (off the mailing list)?
Thanks, Junjun > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Joachim Baran > Sent: Thursday, August 13, 2009 12:56 PM > To: Junjun Zhang > Cc: [email protected] > Subject: Re: [mart-dev] Creating a single dataset for multiple species > > Hello, > > 2009/7/20 Junjun Zhang <[email protected]>: > > As Syed pointed out earlier on, you start with one species by run > > Naïve and Export the naïve configure to the database, and > then "Alt-N" > > to bring in the other species. When prompted with the > question "Create new template rather than use existing one?", > ask "No". After this, a template configure will be created. > When you expend the "PartitionTable: Datasets" > > node in the left tree panel, you should be able to see two > "Partition", one for each species. Don't forget to do "Export" again. > > From now on, you should be able to make changes to the > configuration, and the changes will be propagate to the two species. > > Follow the same process to add more species as you need. > Adding the species worked fine and I do indeed see several > datasets in the tree on the left-hand side in MartEditor now. > However, after exporting and running 'perl bin/configure.pl > --clean -r conf/myMart.xml' again, I do not see the added > species in the selection box '- CHOOSE DATASET -' in the > BioMart web-interface. The selection box only contains the > choice 'my ensembl', which corresponds to the name that I > have chosen for the template in MartEditor. In fact, when I > choose this entry, the data I can query seems to correspond > to the first species for which I have run 'Naive' in MartEditor first. > > How do I make the other species appear in that selection box as well? > > Thanks, > Joachim > > -- > B.1079 Michael Smith Building > Faculty of Life Sciences > The University of Manchester > Oxford Road > Manchester > M13 9PT > United Kingdom >
